Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt23m07
(585 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0809 - 21426670-21426753,21427188-21427317,21427403-214274... 140 7e-34
08_01_1061 - 10804269-10804352,10804464-10804593,10804696-108047... 81 6e-16
10_08_0598 + 19093417-19094220 31 0.89
02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-57... 29 2.1
08_02_0216 + 14390739-14390847,14390983-14391017,14391112-143911... 29 3.6
03_04_0058 - 16915281-16915313,16915424-16915535,16915585-169169... 28 4.8
10_02_0133 - 5661860-5662034,5662229-5662384,5663849-5663874 27 8.3
07_03_0846 - 21983581-21986055 27 8.3
01_04_0021 - 15151645-15151809,15152184-15152343,15152548-151530... 27 8.3
>08_02_0809 -
21426670-21426753,21427188-21427317,21427403-21427452,
21428209-21428349,21428907-21429047,21429144-21429251
Length = 217
Score = 140 bits (339), Expect = 7e-34
Identities = 72/158 (45%), Positives = 92/158 (58%), Gaps = 1/158 (0%)
Frame = +2
Query: 113 AAKNEFVTCGSILKLINTDLKLRLHSHDVKYGSGSGQQSVTAVEVSDDNNSHWLVRPMTG 292
AA+ V GS +KL++ K RLHSHDV YGSGSGQQSVT DD+NS+W+VRP
Sbjct: 31 AAEGVEVAYGSTIKLMHEKTKHRLHSHDVPYGSGSGQQSVTGFPEVDDSNSYWIVRPSPD 90
Query: 293 ETCKRGAPIKCNTNIRLQHVATKKNLHSHFFTSPLSGNQEVSCY-XXXXXXXXXXXNWTV 469
+ K+G I+ + IRLQH+ T+K LHSH SPLSGN EVSC+ +
Sbjct: 91 SSAKQGDAIETGSIIRLQHMRTRKWLHSHLHASPLSGNLEVSCFGGDGQSDTGDYWRLEI 150
Query: 470 VCNNDYWRRDTPVKFRHVDTGSYLAGSGRTFGRPINGQ 583
W++D V+ RHVDTG YL + + R GQ
Sbjct: 151 EGGGKLWKQDQKVRLRHVDTGGYLHSHNKKYNRLGGGQ 188
Score = 35.5 bits (78), Expect = 0.031
Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 2/110 (1%)
Frame = +2
Query: 98 SEKTEAAKNEFVTCGSILKLINTDLKLRLHSH-DVKYGSGSGQQSVTAVEVSDDNNSHWL 274
S + A + + + GSI++L + + LHSH SG+ + S + D +W
Sbjct: 88 SPDSSAKQGDAIETGSIIRLQHMRTRKWLHSHLHASPLSGNLEVSCFGGDGQSDTGDYWR 147
Query: 275 VRPMTGETCKRGAPIKCNTNIRLQHVATKKNLHSHFFT-SPLSGNQEVSC 421
+ G G K + +RL+HV T LHSH + L G Q+ C
Sbjct: 148 LEIEGG-----GKLWKQDQKVRLRHVDTGGYLHSHNKKYNRLGGGQQEVC 192
>08_01_1061 -
10804269-10804352,10804464-10804593,10804696-10804745,
10805154-10805216,10806235-10806375,10806541-10806925,
10807735-10808339
Length = 485
Score = 81.0 bits (191), Expect = 6e-16
Identities = 37/67 (55%), Positives = 47/67 (70%)
Frame = +2
Query: 131 VTCGSILKLINTDLKLRLHSHDVKYGSGSGQQSVTAVEVSDDNNSHWLVRPMTGETCKRG 310
+T GS +KL++ K RLHSHDV YGSGSGQQSVT+ DD+NS+W+VRP + K+G
Sbjct: 331 ITYGSAIKLMHERTKFRLHSHDVPYGSGSGQQSVTSFPNVDDSNSYWIVRPQPDTSAKQG 390
Query: 311 APIKCNT 331
PI T
Sbjct: 391 DPITHGT 397
Score = 35.9 bits (79), Expect = 0.024
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +2
Query: 488 WRRDTPVKFRHVDTGSYLAGSGRTFGRPINGQ 583
WR++ ++ RHVDTG YL R + R GQ
Sbjct: 425 WRQNQKIRLRHVDTGGYLHSHDRKYTRIAGGQ 456
>10_08_0598 + 19093417-19094220
Length = 267
Score = 30.7 bits (66), Expect = 0.89
Identities = 20/64 (31%), Positives = 31/64 (48%)
Frame = +3
Query: 390 HPSLAIKRYHVMETMRVKGTVETIGLWSATMTTGGEIHQ*NLDMLILDRILQAPGEHLVV 569
H A H E R+ G V + W+AT +GGE + + +++ +L A GE L +
Sbjct: 13 HARTASHPCHYPELARLDGGVRELMSWTATSRSGGE---GSSGLALVEAVLAALGEVLEL 69
Query: 570 PSMV 581
P V
Sbjct: 70 PVAV 73
>02_01_0084 -
573638-574305,574705-574900,574997-577246,578053-579174,
579266-579370,579975-580028,580244-580344,580454-581423,
582030-582203,582341-582643,582719-582856,582993-583247,
584230-584370,585008-585289,585395-585540,585627-585690,
585723-585799,586285-586301,587728-587867,587972-588029,
588121-588218,588727-588776,589260-589743
Length = 2630
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -3
Query: 529 SINMSKFYWCISPPVVIVADHSPIVSTVPFTLIV 428
SIN +WC S V+V D + T+ FTL V
Sbjct: 499 SINQLLEFWCKSHGAVLVDDKEYVTKTILFTLTV 532
>08_02_0216 +
14390739-14390847,14390983-14391017,14391112-14391153,
14391253-14391346,14391476-14391672,14392407-14392424,
14392938-14393182,14393300-14393657,14393741-14394316,
14395172-14395447
Length = 649
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -1
Query: 180 LNFKSVLMSFNIDPHVTNSFFAASVFSLIIEMRNTTVTKV 61
LNF + ++ N DPH F +VF L E R +T++
Sbjct: 513 LNFSNPVIVKNFDPHACGWAFGMNVFDL-AEWRRQNITEI 551
>03_04_0058 -
16915281-16915313,16915424-16915535,16915585-16916990,
16919112-16919282
Length = 573
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -1
Query: 180 LNFKSVLMSFNIDPHVTNSFFAASVFSLI 94
LNF ++S IDPH F ++F LI
Sbjct: 406 LNFSHPIISSKIDPHTCGWAFGMNIFDLI 434
>10_02_0133 - 5661860-5662034,5662229-5662384,5663849-5663874
Length = 118
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 482 DYWRRDTPVKFRHVDTGSYLA 544
DYW RD PV+ V G+ LA
Sbjct: 65 DYWWRDVPVRLPGVSCGAVLA 85
>07_03_0846 - 21983581-21986055
Length = 824
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 263 SHWLVRPMTGETCKRGAPIKCNTN 334
S W ++ TG CKR P++C TN
Sbjct: 323 SDWDLQDFTGG-CKRNVPLQCQTN 345
>01_04_0021 -
15151645-15151809,15152184-15152343,15152548-15153025,
15153243-15153291,15153585-15153734
Length = 333
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +1
Query: 103 KNGSCEE*-ICDVWINIKTHQHRLEVK 180
+ GS EE + DVW++++ HQH V+
Sbjct: 88 EGGSLEESAMVDVWLDVEAHQHEAAVR 114
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,360,737
Number of Sequences: 37544
Number of extensions: 295324
Number of successful extensions: 648
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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