Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23m07
         (585 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.3  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   6.7  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   6.7  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   8.9  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   8.9  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 8/33 (24%), Positives = 19/33 (57%)
 Frame = -1

Query: 159 MSFNIDPHVTNSFFAASVFSLIIEMRNTTVTKV 61
           +S+N+  H+    F    F  I+++RN ++ ++
Sbjct: 342 LSYNMLTHIDARMFKDLFFLQILDLRNNSIDRI 374


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 420 HDTS*LPERGEVKKC 376
           H+   LPERGE+  C
Sbjct: 303 HEFQILPERGELGHC 317


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = -2

Query: 281 GEPASDYCYHQRPQPPSQTAVLIQTHTLHHANEV 180
           G PA+     Q P   S  A+    H  HH  E+
Sbjct: 446 GSPATTAAPPQLPTEESVDALCNTLHHWHHCPEI 479


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 5/11 (45%), Positives = 7/11 (63%)
 Frame = +1

Query: 547 LRANIWSSHQW 579
           L  N+W  H+W
Sbjct: 67  LTTNVWLEHEW 77


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 516 DMLILDRILQAP 551
           DM +L R+LQAP
Sbjct: 617 DMPVLKRVLQAP 628


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,074
Number of Sequences: 438
Number of extensions: 3126
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)