Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23m06
         (583 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase |Sch...    28   0.87 
SPAC1039.08 |||serine acetyltransferase |Schizosaccharomyces pom...    27   1.5  
SPAC4G9.10 |arg3||ornithine carbamoyltransferase Arg3|Schizosacc...    27   2.0  
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|...    27   2.6  
SPAP8A3.07c |||phospho-2-dehydro-3-deoxyheptonate aldolase |Schi...    25   6.1  
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        25   8.1  

>SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 368

 Score = 28.3 bits (60), Expect = 0.87
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +3

Query: 273 WKKIANDPELEGKWSIGSVRTNVREDRRGILSEARRQCGITFEI 404
           WK + NDP+L+G ++I      +R  RR  L       GI  E+
Sbjct: 118 WKGLINDPDLDGSYNINK---GIRVARRIFLELLETGVGIASEM 158


>SPAC1039.08 |||serine acetyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -1

Query: 364 KIPLLSSLTFVLTLPIDHLPSSSGSFAIFF 275
           K  L  SL+ VL LP+DH+  SS S   +F
Sbjct: 45  KKTLRESLSCVLALPLDHVTGSSESMENWF 74


>SPAC4G9.10 |arg3||ornithine carbamoyltransferase
           Arg3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 327

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 15/37 (40%), Positives = 24/37 (64%)
 Frame = +3

Query: 336 NVREDRRGILSEARRQCGITFEIEGLDQEQDALQNDD 446
           NVR+D   I++EA  + G TFEI  ++  + A++N D
Sbjct: 197 NVRDDILSIVNEAANENGSTFEI--VNDPKVAVKNAD 231


>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 623

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
 Frame = +1

Query: 310 NGLLVA----LERMLEKIEEEF*VKPEDSVVSLSK*RAWIKSRTRCRMTTVISSRKSFTS 477
           NGL +A    ++   E I +EF VKPE  V       + I       +TTV+S  +S+  
Sbjct: 280 NGLEIARVTIVDMKSEVIYDEF-VKPESPVTDYVTQYSGITEEKLRNVTTVLSDVQSYLK 338

Query: 478 RKNETNPRSTVICPRKLRNH-*CLRKTRP 561
           +  + N   TV+    L +   CL+ T P
Sbjct: 339 KTVDNN---TVLLGHSLNSDLNCLKFTHP 364


>SPAP8A3.07c |||phospho-2-dehydro-3-deoxyheptonate aldolase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 273 WKKIANDPELEGKWSI 320
           WK + NDP L+G ++I
Sbjct: 116 WKGLVNDPNLDGSFAI 131


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 14/55 (25%), Positives = 28/55 (50%)
 Frame = +3

Query: 405  EGLDQEQDALQNDDSNQFTEVIYVEEKRNKSPKHGYLSAKTPKSLMSAENTPKKK 569
            E  ++ ++ +Q   ++Q+T++I V +   +S   G L  K    L    +TP+ K
Sbjct: 1093 ENCEKAKEMIQEKVASQYTQMITVPDTVYESIMKGILMKKLRSDLKVFVDTPEIK 1147


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,188,242
Number of Sequences: 5004
Number of extensions: 40433
Number of successful extensions: 110
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)