Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23m06
         (583 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0535 + 3952066-3952986                                           29   2.7  
11_06_0375 - 22894125-22894667                                         28   4.7  
02_04_0481 + 23284296-23284448,23284553-23284753,23284855-232879...    27   8.2  

>07_01_0535 + 3952066-3952986
          Length = 306

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +3

Query: 414 DQEQDALQNDDSNQFTEVIYVEEKRNKSPKHGYLSAKTPKSLMSAENTP 560
           +QE+   Q+ D  + T   Y++E +    +  Y   K P      ENTP
Sbjct: 99  EQEKKPFQDQDGERKTPKQYLDEDQKTVQQCQYEDKKVPNQCKDEENTP 147


>11_06_0375 - 22894125-22894667
          Length = 180

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 10/21 (47%), Positives = 18/21 (85%), Gaps = 1/21 (4%)
 Frame = +3

Query: 258 WKSEVWKKI-ANDPELEGKWS 317
           W++ VW+KI A+DP +EG+++
Sbjct: 116 WRAHVWEKIFADDPPVEGEFT 136


>02_04_0481 +
           23284296-23284448,23284553-23284753,23284855-23287971,
           23288510-23289353,23289468-23290120,23290573-23290676,
           23290898-23291000
          Length = 1724

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 20/68 (29%), Positives = 35/68 (51%)
 Frame = +3

Query: 339 VREDRRGILSEARRQCGITFEIEGLDQEQDALQNDDSNQFTEVIYVEEKRNKSPKHGYLS 518
           + E+ +   SE  R  G   E++ + QE DAL+N+  +   E+  VEEK +   +   ++
Sbjct: 679 ILEEDKADRSEMMRLSG---ELQRMVQETDALKNEKDSLQKELERVEEKSSLLREKLSMA 735

Query: 519 AKTPKSLM 542
            K  K L+
Sbjct: 736 VKKGKGLV 743


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,594,476
Number of Sequences: 37544
Number of extensions: 239541
Number of successful extensions: 680
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)