Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23m06
         (583 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z97628-3|CAB10727.1|  819|Caenorhabditis elegans Hypothetical pr...    31   0.45 
Z79755-13|CAB02114.1|  819|Caenorhabditis elegans Hypothetical p...    31   0.45 
Z80220-4|CAB02307.2|  566|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AF002198-7|AAF99935.1|  693|Caenorhabditis elegans Hypothetical ...    29   2.4  
AF078784-3|AAY86249.1|  254|Caenorhabditis elegans Hypothetical ...    28   4.2  
Z77669-5|CAK12563.1|  976|Caenorhabditis elegans Hypothetical pr...    27   7.4  
Z77669-4|CAB01242.1|  988|Caenorhabditis elegans Hypothetical pr...    27   7.4  
U41017-3|AAC48213.1|  548|Caenorhabditis elegans Hypothetical pr...    27   7.4  
U50308-6|AAG24025.2|  936|Caenorhabditis elegans Dispatched fami...    27   9.7  
AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ...    27   9.7  
AF039716-5|AAB96740.1|  488|Caenorhabditis elegans Hypothetical ...    27   9.7  

>Z97628-3|CAB10727.1|  819|Caenorhabditis elegans Hypothetical
           protein F43G9.12 protein.
          Length = 819

 Score = 31.5 bits (68), Expect = 0.45
 Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
 Frame = +3

Query: 339 VREDRRGILSEARRQCGITFEIEGLDQEQDALQND-DSNQFTEVIYVEEKRNKSPKHGYL 515
           +++D++ +  E +RQ  +  E E L +E+   +   D     E +  E+K+ K+ +H YL
Sbjct: 59  LKKDKKKV-EELKRQHKLEEEAEKLYKEEKIRKEALDKIVKKEKLSKEDKKTKNERHKYL 117

Query: 516 SAKTPKSLMSAENTPKKKYKRN 581
                KS     N+   +Y+ N
Sbjct: 118 DKYRDKSAKHISNSESYEYEEN 139


>Z79755-13|CAB02114.1|  819|Caenorhabditis elegans Hypothetical
           protein F43G9.12 protein.
          Length = 819

 Score = 31.5 bits (68), Expect = 0.45
 Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
 Frame = +3

Query: 339 VREDRRGILSEARRQCGITFEIEGLDQEQDALQND-DSNQFTEVIYVEEKRNKSPKHGYL 515
           +++D++ +  E +RQ  +  E E L +E+   +   D     E +  E+K+ K+ +H YL
Sbjct: 59  LKKDKKKV-EELKRQHKLEEEAEKLYKEEKIRKEALDKIVKKEKLSKEDKKTKNERHKYL 117

Query: 516 SAKTPKSLMSAENTPKKKYKRN 581
                KS     N+   +Y+ N
Sbjct: 118 DKYRDKSAKHISNSESYEYEEN 139


>Z80220-4|CAB02307.2|  566|Caenorhabditis elegans Hypothetical
           protein T08G11.4 protein.
          Length = 566

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 366 SEARRQCGITFEIEGLDQEQDALQNDDSNQFTEVI 470
           +E  +QC +   I  +DQ +D L+N D  Q T+ +
Sbjct: 155 NELTKQCEVMKPIYPIDQHKDILENPDYQQITKTM 189


>AF002198-7|AAF99935.1|  693|Caenorhabditis elegans Hypothetical
           protein F35F10.10 protein.
          Length = 693

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 483 KRNKSPKHGYLSAKTPKSLMSAENTPK 563
           ++NK  KHG L+ +T  +  + ENTPK
Sbjct: 57  EKNKESKHGSLANQTSANNATEENTPK 83


>AF078784-3|AAY86249.1|  254|Caenorhabditis elegans Hypothetical
           protein H34I24.3 protein.
          Length = 254

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +3

Query: 393 TFEIEGLDQEQDALQNDDSNQFTEVIYVEEKRNKSPKHGYLSAK 524
           TF I G++++QD+ Q+       E I+ E+K + + K+  L+ K
Sbjct: 176 TFLINGMEEKQDSDQSSIKRPSHENIHEEQKIHSTAKNPLLTTK 219


>Z77669-5|CAK12563.1|  976|Caenorhabditis elegans Hypothetical
           protein T07F10.1b protein.
          Length = 976

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 22/100 (22%), Positives = 43/100 (43%), Gaps = 3/100 (3%)
 Frame = +3

Query: 255 QWKSEVWKKIANDPELEGKWSIGSVRTNVREDRRGILSEARRQCGITFEIEGLDQEQDAL 434
           +W   VW ++    ELE KW   +    ++ D+  I++             GL +E   +
Sbjct: 586 KWDVPVWYQVVGSSELEMKWMKRNEPLIIKSDKNVIINAESNGFYRAGYSSGLWKEISEM 645

Query: 435 QNDDSNQF---TEVIYVEEKRNKSPKHGYLSAKTPKSLMS 545
             ++  QF   T V  +++    + + G LS   P +L++
Sbjct: 646 LKENHEQFSPQTRVRLIDDSFALA-RAGLLSYSIPLNLIT 684


>Z77669-4|CAB01242.1|  988|Caenorhabditis elegans Hypothetical
           protein T07F10.1a protein.
          Length = 988

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 22/100 (22%), Positives = 43/100 (43%), Gaps = 3/100 (3%)
 Frame = +3

Query: 255 QWKSEVWKKIANDPELEGKWSIGSVRTNVREDRRGILSEARRQCGITFEIEGLDQEQDAL 434
           +W   VW ++    ELE KW   +    ++ D+  I++             GL +E   +
Sbjct: 598 KWDVPVWYQVVGSSELEMKWMKRNEPLIIKSDKNVIINAESNGFYRAGYSSGLWKEISEM 657

Query: 435 QNDDSNQF---TEVIYVEEKRNKSPKHGYLSAKTPKSLMS 545
             ++  QF   T V  +++    + + G LS   P +L++
Sbjct: 658 LKENHEQFSPQTRVRLIDDSFALA-RAGLLSYSIPLNLIT 696


>U41017-3|AAC48213.1|  548|Caenorhabditis elegans Hypothetical
           protein T26C11.4 protein.
          Length = 548

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
 Frame = +3

Query: 306 GKWSIGSVRTNVREDRRGILSEARRQCGITFEIEGLDQEQDALQND--DSNQFTEVIYVE 479
           G+ S  S R +   D+R  LS + R  G   + +G   E+D  ++   +     E  ++E
Sbjct: 212 GQDSFRSGRDDAARDQREFLSRSMRSSGSQRQDQGFQSERDEARDRYIEHLSSNESTWME 271

Query: 480 EKRNKS 497
             RN+S
Sbjct: 272 NSRNQS 277


>U50308-6|AAG24025.2|  936|Caenorhabditis elegans Dispatched family
           protein 2 protein.
          Length = 936

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = +2

Query: 149 SFRVTYYATCSSCAGRFSCESIKKIHSLFCR**ISAMEVRSLEKNC 286
           S  + YY TC +   + SCE++ +   L  R  +   ++ S ++ C
Sbjct: 199 SLNIPYYTTCPNMTTQNSCEALNENDILNFRYLLQKCKINSTDEVC 244


>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
            protein F55F10.1 protein.
          Length = 4368

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +3

Query: 288  NDPELEGKWSIGSVRTNVREDRRGILSEARRQCGITFEIEGLDQEQDALQNDDSN 452
            +D ++ GK +I   R   RE++R    E R++  +   +EG   E D  + +D N
Sbjct: 3987 SDRQMVGKGTIEEARQTKREEKRE--EEKRKRRELKDALEGTAGEDDGGEVEDEN 4039


>AF039716-5|AAB96740.1|  488|Caenorhabditis elegans Hypothetical
           protein W03G9.5 protein.
          Length = 488

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +3

Query: 336 NVREDRRGILSEARRQCGITFEIEGLDQEQDALQNDDSNQF 458
           NV ++ R I  E     G T E EGL+  QD    +D N F
Sbjct: 337 NVPQNERNITMEEIIAAGKTTEEEGLNTAQDDTIVEDENGF 377


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,089,892
Number of Sequences: 27780
Number of extensions: 223223
Number of successful extensions: 621
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)