Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23m06
         (583 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    25   0.54 
M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    22   5.1  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   6.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.9  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   8.9  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   8.9  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 25.0 bits (52), Expect = 0.54
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 222 YIAYFADDEFPQWKSEVWKK 281
           Y+    D + P WK+ VWKK
Sbjct: 410 YLKPSYDAQEPAWKTHVWKK 429


>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 483 KRNKSPKHGYLSAKTPKSLMSAENTPKKK 569
           KR+ + K+G    K P++  SAE   + K
Sbjct: 8   KRSHNGKNGSPEEKRPRTAFSAEQLARLK 36


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 6/18 (33%), Positives = 10/18 (55%)
 Frame = +2

Query: 176 CSSCAGRFSCESIKKIHS 229
           C +C   F+C    K+H+
Sbjct: 206 CKACGKGFTCSKQLKVHT 223


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/24 (37%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +2

Query: 455  VHGSHLRRG-KTKQIPEARLFVRE 523
            V G+ L+   + +Q+PE  LF++E
Sbjct: 1312 VRGAVLQSSDRLRQLPEGSLFIKE 1335


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +3

Query: 345 EDRRGILSEARR 380
           ED RGIL  ARR
Sbjct: 207 EDARGILEAARR 218


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +3

Query: 345 EDRRGILSEARR 380
           ED RGIL  ARR
Sbjct: 297 EDARGILEAARR 308


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,399
Number of Sequences: 438
Number of extensions: 2422
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)