Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt23m04
(617 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1099 - 30886361-30886591,30886739-30886941,30887030-308875... 54 9e-08
09_06_0267 + 21938300-21938371,21938963-21939235,21940665-219412... 54 1e-07
07_03_0968 - 23027940-23028149,23028800-23029002,23029610-230301... 53 2e-07
03_05_0434 + 24252994-24253449,24254791-24254877,24255450-242557... 52 3e-07
05_06_0191 - 26265460-26267016,26267858-26268356,26268789-262688... 29 2.2
01_01_0161 - 1385408-1385566,1385815-1385943,1386164-1386322,138... 29 3.0
10_01_0172 - 1928648-1930751,1932019-1932243,1933709-1934676 29 3.9
09_01_0042 + 764349-764763,764853-764902,765096-765172,766179-76... 28 5.2
>04_04_1099 -
30886361-30886591,30886739-30886941,30887030-30887555,
30887751-30887988,30888592-30888695,30888784-30889059,
30889216-30889218
Length = 526
Score = 54.0 bits (124), Expect = 9e-08
Identities = 24/70 (34%), Positives = 46/70 (65%), Gaps = 1/70 (1%)
Frame = +1
Query: 403 AIELTGYGRFHYMLLAVCGLVSTSEEMDVISMSFILPSAQCDLXLTTQTKGWLNSIIFIG 582
A+ +G+GR+ ++L+ G+ +E M+++ +SF+ PS Q + LT+ + + SI+F+G
Sbjct: 15 ALLSSGFGRYQILILSYAGVGLIAEAMEMMLLSFVGPSVQLEWKLTSHQESMITSIVFVG 74
Query: 583 MMVGR-TLGV 609
M++G T GV
Sbjct: 75 MLIGAYTWGV 84
>09_06_0267 +
21938300-21938371,21938963-21939235,21940665-21941202,
21941288-21941490,21941603-21941827
Length = 436
Score = 53.6 bits (123), Expect = 1e-07
Identities = 22/66 (33%), Positives = 41/66 (62%)
Frame = +1
Query: 397 ERAIELTGYGRFHYMLLAVCGLVSTSEEMDVISMSFILPSAQCDLXLTTQTKGWLNSIIF 576
+ A+ G+G+F +LA G+ SE M+++ +SF+ S Q + L+ Q + + S++F
Sbjct: 35 DEALISMGFGKFQAFVLAYSGMAKISEAMEMMLLSFVGQSVQAEWELSAQAESLITSVVF 94
Query: 577 IGMMVG 594
+GM+VG
Sbjct: 95 VGMLVG 100
>07_03_0968 -
23027940-23028149,23028800-23029002,23029610-23030138,
23030342-23030579,23031121-23031168,23031199-23031494
Length = 507
Score = 53.2 bits (122), Expect = 2e-07
Identities = 24/84 (28%), Positives = 49/84 (58%)
Frame = +1
Query: 355 SDPEKGSNSEKADFERAIELTGYGRFHYMLLAVCGLVSTSEEMDVISMSFILPSAQCDLX 534
++ E+ E + A+ G+GRF ++LA + +E M+V+ +SF+ PS + +
Sbjct: 6 AEEEEEEEEETYTTDDALTRAGFGRFQALVLAYACVGWVAEAMEVMLLSFVGPSVKAEWG 65
Query: 535 LTTQTKGWLNSIIFIGMMVGRTLG 606
++ +G ++S++F GM++G LG
Sbjct: 66 VSGAAEGLVSSVVFAGMLIGACLG 89
>03_05_0434 +
24252994-24253449,24254791-24254877,24255450-24255748,
24256146-24256383,24256907-24257441,24257527-24257729,
24258311-24258520
Length = 675
Score = 52.4 bits (120), Expect = 3e-07
Identities = 21/73 (28%), Positives = 44/73 (60%)
Frame = +1
Query: 376 NSEKADFERAIELTGYGRFHYMLLAVCGLVSTSEEMDVISMSFILPSAQCDLXLTTQTKG 555
N E + A+E G+G+F ++LA G+ E M+++ +SF+ P + + ++ + +
Sbjct: 195 NMETYTTDEALEFMGFGKFQLLVLAYAGMGWVVESMEIMLLSFVGPLVREEWNISAENES 254
Query: 556 WLNSIIFIGMMVG 594
L+S++F GM++G
Sbjct: 255 LLSSVVFAGMLIG 267
>05_06_0191 -
26265460-26267016,26267858-26268356,26268789-26268859,
26269079-26269515,26269626-26269681,26269682-26270479,
26270918-26270973
Length = 1157
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = +2
Query: 434 TTCCWQYAVSSALPRRWTSSRCRSSYPRHSA 526
T CCW + AL R WT R RS H A
Sbjct: 538 TPCCWYFLWLVALNRCWTVYRLRSRGISHPA 568
>01_01_0161 -
1385408-1385566,1385815-1385943,1386164-1386322,
1387228-1387571,1387641-1387905,1387998-1388075,
1388207-1388260,1389341-1389361,1389453-1389578,
1389696-1389863,1389923-1390313,1390629-1390710,
1391175-1391536,1391806-1392630,1392956-1393476
Length = 1227
Score = 29.1 bits (62), Expect = 3.0
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = +3
Query: 456 RSRQHFRGDGRHLDVVHPTLGTVRLXPHHSD*RMA---KQYNLHR 581
RS H + D H T+GT R+ PHHS R+A +Y HR
Sbjct: 826 RSYAHVQVDSPGTATRH-TVGTTRITPHHSRDRLATVRDEYPTHR 869
>10_01_0172 - 1928648-1930751,1932019-1932243,1933709-1934676
Length = 1098
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 96 LTNNKEEAHQIVTGKLYAVGS-ATPPSERRLSVPATTIQSR 215
LT+NKE + IVT + AVGS P + L P + + R
Sbjct: 421 LTDNKERSRIIVTSRFQAVGSTCCRPENKDLLYPISFLSPR 461
>09_01_0042 +
764349-764763,764853-764902,765096-765172,766179-766236,
767481-767607,768665-768769,768842-769424,769470-769775,
770048-770139,770391-770440
Length = 620
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -1
Query: 380 ELEPFSGSDFDFLTEGTTPSSAVLEPGPF 294
E+ P SGS F+FLTE T S PG +
Sbjct: 354 EMMPVSGSPFNFLTETTIGSRIDQVPGGY 382
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.132 0.394
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,602,170
Number of Sequences: 37544
Number of extensions: 468088
Number of successful extensions: 1308
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1307
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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