Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23m03
         (606 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0746 - 31451303-31453168,31453243-31453357,31454296-314543...    30   1.2  
08_02_0581 + 18986084-18986176,18986284-18986668,18986779-189868...    29   3.8  
10_08_0330 - 16816497-16819952                                         27   8.7  

>02_05_0746 -
           31451303-31453168,31453243-31453357,31454296-31454351,
           31455057-31455138,31455484-31455517,31455912-31456016,
           31456108-31456387
          Length = 845

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/33 (39%), Positives = 23/33 (69%)
 Frame = -2

Query: 164 LVDDQAFVSISQNQNNFARFLKTSIKLTCNEIF 66
           L DD A + +SQ+ N  AR+L++++   CN++F
Sbjct: 615 LADDNALLKVSQSINA-ARYLESTLTEWCNDVF 646


>08_02_0581 +
           18986084-18986176,18986284-18986668,18986779-18986861,
           18986966-18987110,18987823-18987951,18988047-18988171,
           18988261-18988419,18988503-18988665,18988750-18988875,
           18989110-18989471,18989572-18989772,18989873-18989982,
           18990079-18990163,18990298-18990426,18990505-18990610,
           18990688-18990776,18990885-18991184
          Length = 929

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +2

Query: 245 SLPYFVFVTKLYTYVTIKYLNLIA-RILNNQNYDIIWL*VVVYLNFQMFCCFF 400
           S  YF  ++ +Y  V + + +LI        NY I ++   +Y+N Q+   FF
Sbjct: 405 SYSYFFALSAVYMIVFVVFGSLIGLNFFKTNNYGIQFVFYFIYINLQIALAFF 457


>10_08_0330 - 16816497-16819952
          Length = 1151

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +1

Query: 544  SLSENHTTGKIFTGNQ 591
            +LS NH +GKI TGNQ
Sbjct: 1031 NLSNNHLSGKISTGNQ 1046


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,012,218
Number of Sequences: 37544
Number of extensions: 224914
Number of successful extensions: 328
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 328
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)