Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt23l23
(534 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC126.12 |||NGG1p interacting factor 3 family|Schizosaccharomy... 61 9e-11
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ... 27 1.3
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 27 1.8
SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|ch... 26 3.1
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|... 26 3.1
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 26 3.1
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 26 4.1
SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces p... 26 4.1
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce... 25 5.4
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch... 25 5.4
SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 5.4
SPBC1271.09 |||glycerophosphodiester transporter|Schizosaccharom... 25 7.1
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 25 9.4
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 9.4
>SPCC126.12 |||NGG1p interacting factor 3 family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 278
Score = 61.3 bits (142), Expect = 9e-11
Identities = 35/78 (44%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Frame = +3
Query: 294 VLEKFAPKELAESWDNTGLLVE-PYTPRQITKILLTNDLTEDVALEA-EILACEMIISYH 467
V+E +LA+SWDNTGLL+E P+ + +LLT DLTE VA EA I++YH
Sbjct: 13 VVESIYNPKLADSWDNTGLLLEAPFPRTNASSVLLTIDLTEKVAEEAISNKLVSSIVAYH 72
Query: 468 PPIFAPLKSIVQRSWKER 521
P IF LK+I ++R
Sbjct: 73 PIIFRGLKAITMEDPQQR 90
>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
2|||Manual
Length = 962
Score = 27.5 bits (58), Expect = 1.3
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 15/84 (17%)
Frame = +2
Query: 5 FWPMALKPLTSIFLKNLKCHI*QIFYSDYF-----KKITFLKQFVFKNF--------TLL 145
F P A+K FL + + ++YS YF KK T +K F+ F T +
Sbjct: 523 FKPSAIKEFIEYFLCDQLMNCLSVYYSKYFEGKDSKKFTLVKHFMNSLFGRVKLNEQTEI 582
Query: 146 EWQTRN--ITNVLSVRQAHFKVKK 211
W TRN I L + H K
Sbjct: 583 IWHTRNYRIVEALVRKLIHLSTPK 606
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 27.1 bits (57), Expect = 1.8
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = -3
Query: 454 IISHARISASKATSSVKSLVNKILVICLGV*GSTNKPVLSQLSANSFGANFSSTVTTL-- 281
++ + S SS L KI+ + +GV + + + +F FSS ++ L
Sbjct: 1666 VVKYTEGSTEGTVSSKSVLFRKIIALIIGVFAELHNSMAEFVHQKTFFRLFSSILSELDD 1725
Query: 280 SKDTAQNFSVDI 245
+KD ++ VDI
Sbjct: 1726 AKDVLESCFVDI 1737
>SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 492
Score = 26.2 bits (55), Expect = 3.1
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +3
Query: 210 NSRNHLFTHFIKMSTEKFCAVSLERVVTVLEKFAPKELAESWD 338
NS H K T+K ++E ++ KFAP + A + D
Sbjct: 335 NSEPRFLIHDTKAETDKDFDSAVEAIIAAAAKFAPGDPASASD 377
>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 623
Score = 26.2 bits (55), Expect = 3.1
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = +2
Query: 71 QIFYSDYFKKITFLKQFVFKNFTLLEWQTRNITNVLSVRQAHFK 202
++ Y ++ K + + +V + + E + RN+T VLS Q++ K
Sbjct: 295 EVIYDEFVKPESPVTDYVTQYSGITEEKLRNVTTVLSDVQSYLK 338
>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 26.2 bits (55), Expect = 3.1
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 7/43 (16%)
Frame = -2
Query: 386 FGYLSRCVRFH-------QQTSVIPTLCQFFWSKFFKYCYYSF 279
F + S C RFH ++V+P C FF+ F + + F
Sbjct: 82 FFFFSHCRRFHIAIFIHPYDSNVVPFFCFFFYFSLFSFFSFLF 124
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
transporter Bfr1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1530
Score = 25.8 bits (54), Expect = 4.1
Identities = 15/70 (21%), Positives = 29/70 (41%)
Frame = +3
Query: 189 RHILKSRNSRNHLFTHFIKMSTEKFCAVSLERVVTVLEKFAPKELAESWDNTGLLVEPYT 368
RH++ + H F + + + + VT+ E FA + WDN+ ++ T
Sbjct: 284 RHLIATAFGLTHTFNTKVGNDFVRGVSGGERKRVTISEGFATRPTIACWDNSTRGLDSST 343
Query: 369 PRQITKILLT 398
+ +L T
Sbjct: 344 AFEFVNVLRT 353
>SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 352
Score = 25.8 bits (54), Expect = 4.1
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = -2
Query: 371 RCVRFHQQTSVIPTLCQFFWSKFFKY 294
RCVRF + P L W K KY
Sbjct: 119 RCVRFVEAMGTSPILATGSWDKTLKY 144
>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 25.4 bits (53), Expect = 5.4
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +2
Query: 101 ITFLKQFVFKNFTLLEWQTRNITNVLSVRQAHF-KVKKFKESLVHTF 238
+ F F F + W+ ITN L+ ++ F + K F ++ + TF
Sbjct: 647 VVFFPSFAFLQQAVKVWEMNGITNRLNAKKPLFIESKDFGDNPLDTF 693
>SPBP19A11.04c |mor2|cps12|morphogenesis protein
Mor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2196
Score = 25.4 bits (53), Expect = 5.4
Identities = 23/81 (28%), Positives = 35/81 (43%)
Frame = -3
Query: 301 SSTVTTLSKDTAQNFSVDILIKCVNK*FLEFLDFKMCLPN*KNISNISCLPLEKSEVLEN 122
SS L K + FS +I N FL + + + N N+S LPL + N
Sbjct: 1162 SSNEVLLQKVINRCFSKEISQTISNYYFLSLSEMLIQI-NPNNLSKPKLLPLCLVNLSTN 1220
Query: 121 KLFQKCNFFEIITVEYLSNMT 59
L + FE++ +L+N T
Sbjct: 1221 NLSVRLKAFELLGNFHLNNFT 1241
>SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 390
Score = 25.4 bits (53), Expect = 5.4
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +2
Query: 83 SDYFKK--ITFLKQFVFKNFTLLEWQTRNITNVLSVRQAHFK 202
SDYF K +T ++ L E+Q + IT VL + Q H++
Sbjct: 121 SDYFSKEYLTAYRRSELLQNKLHEYQKKLITRVLDMYQLHWQ 162
>SPBC1271.09 |||glycerophosphodiester
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 543
Score = 25.0 bits (52), Expect = 7.1
Identities = 8/27 (29%), Positives = 18/27 (66%)
Frame = +3
Query: 240 IKMSTEKFCAVSLERVVTVLEKFAPKE 320
+ + ++ +C+ S+ V+T+L K P+E
Sbjct: 84 VALMSDGYCSNSIGTVITILRKLYPEE 110
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 24.6 bits (51), Expect = 9.4
Identities = 15/72 (20%), Positives = 33/72 (45%)
Frame = +2
Query: 5 FWPMALKPLTSIFLKNLKCHI*QIFYSDYFKKITFLKQFVFKNFTLLEWQTRNITNVLSV 184
FWP+ ++ S F + H + + + + FL+ +F + EW+ ++ +L +
Sbjct: 942 FWPLIIRVSESAFKMHKDGH--NVKVVERYLRTVFLRI----HFLISEWRWEDVAQILFL 995
Query: 185 RQAHFKVKKFKE 220
F +KF +
Sbjct: 996 IFDFFSHRKFND 1007
>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 860
Score = 24.6 bits (51), Expect = 9.4
Identities = 19/66 (28%), Positives = 31/66 (46%)
Frame = -3
Query: 451 ISHARISASKATSSVKSLVNKILVICLGV*GSTNKPVLSQLSANSFGANFSSTVTTLSKD 272
++ A +++ SS+K V+ G GST K L+A +N + +TT S +
Sbjct: 50 VNGASNTSTNQISSLKVDVSSPPSTAPGSAGSTPKTTPVSLNAGVPPSNTGANITTNSNN 109
Query: 271 TAQNFS 254
AQ S
Sbjct: 110 NAQTIS 115
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,248,053
Number of Sequences: 5004
Number of extensions: 46151
Number of successful extensions: 146
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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