Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23l23
         (534 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC007654-1|AAH07654.1|  377|Homo sapiens NIF3L1 protein protein.       93   6e-19
AY251944-1|AAP84064.1|  252|Homo sapiens NIF3L1 isoform gamma pr...    93   6e-19
AY251943-1|AAP84063.1|  285|Homo sapiens NIF3L1 isoform beta pro...    93   6e-19
AK023378-1|BAB14551.1|  350|Homo sapiens protein ( Homo sapiens ...    93   6e-19
AF283538-1|AAG44846.1|  377|Homo sapiens NIF3L1 protein protein.       93   6e-19
AF060513-1|AAG43131.1|  350|Homo sapiens My018 protein protein.        93   6e-19
AC005037-3|AAY14724.1|  377|Homo sapiens unknown protein.              93   6e-19
AB038949-1|BAB32499.1|  350|Homo sapiens amyotrophic lateral scl...    93   6e-19
AF182416-1|AAG14952.1|  351|Homo sapiens MDS015 protein.               83   5e-16
AJ006778-1|CAA07243.1| 2785|Homo sapiens DRIM protein protein.         30   5.9  

>BC007654-1|AAH07654.1|  377|Homo sapiens NIF3L1 protein protein.
          Length = 377

 Score = 93.1 bits (221), Expect = 6e-19
 Identities = 42/86 (48%), Positives = 56/86 (65%)
 Frame = +3

Query: 270 VSLERVVTVLEKFAPKELAESWDNTGLLVEPYTPRQITKILLTNDLTEDVALEAEILACE 449
           + L+ +++ L  FA    AESWDN GLLVEP  P  +  + LTNDLTE+V  E      +
Sbjct: 28  MDLKALLSSLNDFASLSFAESWDNVGLLVEPSPPHTVNTLFLTNDLTEEVMEEVLQKKAD 87

Query: 450 MIISYHPPIFAPLKSIVQRSWKERVV 527
           +I+SYHPPIF P+K I   +WKER+V
Sbjct: 88  LILSYHPPIFRPMKRITWNTWKERLV 113


>AY251944-1|AAP84064.1|  252|Homo sapiens NIF3L1 isoform gamma
           protein.
          Length = 252

 Score = 93.1 bits (221), Expect = 6e-19
 Identities = 42/86 (48%), Positives = 56/86 (65%)
 Frame = +3

Query: 270 VSLERVVTVLEKFAPKELAESWDNTGLLVEPYTPRQITKILLTNDLTEDVALEAEILACE 449
           + L+ +++ L  FA    AESWDN GLLVEP  P  +  + LTNDLTE+V  E      +
Sbjct: 28  MDLKALLSSLNDFASLSFAESWDNVGLLVEPSPPHTVNTLFLTNDLTEEVMEEVLQKKAD 87

Query: 450 MIISYHPPIFAPLKSIVQRSWKERVV 527
           +I+SYHPPIF P+K I   +WKER+V
Sbjct: 88  LILSYHPPIFRPMKRITWNTWKERLV 113


>AY251943-1|AAP84063.1|  285|Homo sapiens NIF3L1 isoform beta
           protein.
          Length = 285

 Score = 93.1 bits (221), Expect = 6e-19
 Identities = 42/86 (48%), Positives = 56/86 (65%)
 Frame = +3

Query: 270 VSLERVVTVLEKFAPKELAESWDNTGLLVEPYTPRQITKILLTNDLTEDVALEAEILACE 449
           + L+ +++ L  FA    AESWDN GLLVEP  P  +  + LTNDLTE+V  E      +
Sbjct: 28  MDLKALLSSLNDFASLSFAESWDNVGLLVEPSPPHTVNTLFLTNDLTEEVMEEVLQKKAD 87

Query: 450 MIISYHPPIFAPLKSIVQRSWKERVV 527
           +I+SYHPPIF P+K I   +WKER+V
Sbjct: 88  LILSYHPPIFRPMKRITWNTWKERLV 113


>AK023378-1|BAB14551.1|  350|Homo sapiens protein ( Homo sapiens
           cDNA FLJ13316 fis, clone OVARC1001555, weakly similar to
           NGG1-INTERACTING FACTOR 3. ).
          Length = 350

 Score = 93.1 bits (221), Expect = 6e-19
 Identities = 42/86 (48%), Positives = 56/86 (65%)
 Frame = +3

Query: 270 VSLERVVTVLEKFAPKELAESWDNTGLLVEPYTPRQITKILLTNDLTEDVALEAEILACE 449
           + L+ +++ L  FA    AESWDN GLLVEP  P  +  + LTNDLTE+V  E      +
Sbjct: 1   MDLKALLSSLNDFASLSFAESWDNVGLLVEPSPPHTVNTLFLTNDLTEEVMEEVLQKKAD 60

Query: 450 MIISYHPPIFAPLKSIVQRSWKERVV 527
           +I+SYHPPIF P+K I   +WKER+V
Sbjct: 61  LILSYHPPIFRPMKRITWNTWKERLV 86


>AF283538-1|AAG44846.1|  377|Homo sapiens NIF3L1 protein protein.
          Length = 377

 Score = 93.1 bits (221), Expect = 6e-19
 Identities = 42/86 (48%), Positives = 56/86 (65%)
 Frame = +3

Query: 270 VSLERVVTVLEKFAPKELAESWDNTGLLVEPYTPRQITKILLTNDLTEDVALEAEILACE 449
           + L+ +++ L  FA    AESWDN GLLVEP  P  +  + LTNDLTE+V  E      +
Sbjct: 28  MDLKALLSSLNDFASLSFAESWDNVGLLVEPSPPHTVNTLFLTNDLTEEVMEEVLQKKAD 87

Query: 450 MIISYHPPIFAPLKSIVQRSWKERVV 527
           +I+SYHPPIF P+K I   +WKER+V
Sbjct: 88  LILSYHPPIFRPMKRITWNTWKERLV 113


>AF060513-1|AAG43131.1|  350|Homo sapiens My018 protein protein.
          Length = 350

 Score = 93.1 bits (221), Expect = 6e-19
 Identities = 42/86 (48%), Positives = 56/86 (65%)
 Frame = +3

Query: 270 VSLERVVTVLEKFAPKELAESWDNTGLLVEPYTPRQITKILLTNDLTEDVALEAEILACE 449
           + L+ +++ L  FA    AESWDN GLLVEP  P  +  + LTNDLTE+V  E      +
Sbjct: 1   MDLKALLSSLNDFASLSFAESWDNVGLLVEPSPPHTVNTLFLTNDLTEEVMEEVLQKKAD 60

Query: 450 MIISYHPPIFAPLKSIVQRSWKERVV 527
           +I+SYHPPIF P+K I   +WKER+V
Sbjct: 61  LILSYHPPIFRPMKRITWNTWKERLV 86


>AC005037-3|AAY14724.1|  377|Homo sapiens unknown protein.
          Length = 377

 Score = 93.1 bits (221), Expect = 6e-19
 Identities = 42/86 (48%), Positives = 56/86 (65%)
 Frame = +3

Query: 270 VSLERVVTVLEKFAPKELAESWDNTGLLVEPYTPRQITKILLTNDLTEDVALEAEILACE 449
           + L+ +++ L  FA    AESWDN GLLVEP  P  +  + LTNDLTE+V  E      +
Sbjct: 28  MDLKALLSSLNDFASLSFAESWDNVGLLVEPSPPHTVNTLFLTNDLTEEVMEEVLQKKAD 87

Query: 450 MIISYHPPIFAPLKSIVQRSWKERVV 527
           +I+SYHPPIF P+K I   +WKER+V
Sbjct: 88  LILSYHPPIFRPMKRITWNTWKERLV 113


>AB038949-1|BAB32499.1|  350|Homo sapiens amyotrophic lateral
           sclerosis 2 protein.
          Length = 350

 Score = 93.1 bits (221), Expect = 6e-19
 Identities = 42/86 (48%), Positives = 56/86 (65%)
 Frame = +3

Query: 270 VSLERVVTVLEKFAPKELAESWDNTGLLVEPYTPRQITKILLTNDLTEDVALEAEILACE 449
           + L+ +++ L  FA    AESWDN GLLVEP  P  +  + LTNDLTE+V  E      +
Sbjct: 1   MDLKALLSSLNDFASLSFAESWDNVGLLVEPSPPHTVNTLFLTNDLTEEVMEEVLQKKAD 60

Query: 450 MIISYHPPIFAPLKSIVQRSWKERVV 527
           +I+SYHPPIF P+K I   +WKER+V
Sbjct: 61  LILSYHPPIFRPMKRITWNTWKERLV 86


>AF182416-1|AAG14952.1|  351|Homo sapiens MDS015 protein.
          Length = 351

 Score = 83.4 bits (197), Expect = 5e-16
 Identities = 40/87 (45%), Positives = 56/87 (64%), Gaps = 1/87 (1%)
 Frame = +3

Query: 270 VSLERVVTVLEKFAPKELAESWDNTGLLVEPYTPRQITKILLTNDLTEDVALEAEILACE 449
           + L+ +++ L  FA    AESWDN GLLVEP  P  +  + LTNDLTE+V  E      +
Sbjct: 1   MDLKALLSSLNDFASLSFAESWDNVGLLVEPSPPHTVNTLFLTNDLTEEVMEEVLQKKAD 60

Query: 450 MIISYHPPIFAPLKSI-VQRSWKERVV 527
           +I+SYHPPIF P+K I ++   +ER+V
Sbjct: 61  LILSYHPPIFRPMKRINLEHMGRERLV 87


>AJ006778-1|CAA07243.1| 2785|Homo sapiens DRIM protein protein.
          Length = 2785

 Score = 29.9 bits (64), Expect = 5.9
 Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 4/93 (4%)
 Frame = +3

Query: 48  KTLNVIFDKYSTVIISKKLHF*N---NLFSRTSLFSSGKHEIL-LMFFQLGRHILKSRNS 215
           K ++ I+  YST++  KKLH  N     F+      S K+ +  LMF  L +H  K    
Sbjct: 165 KDMSSIYSMYSTLLAHKKLHIRNFAAESFTFLMRKVSDKNALFNLMFLDLDKHPEKVEGV 224

Query: 216 RNHLFTHFIKMSTEKFCAVSLERVVTVLEKFAP 314
              LF    K     F + + + V  +L K  P
Sbjct: 225 GQLLF-EMCKGVRNMFHSCTGQAVKLILRKLGP 256


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,871,104
Number of Sequences: 237096
Number of extensions: 1415243
Number of successful extensions: 2609
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2609
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5216942984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)