Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23l10
         (648 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    24   1.1  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          24   1.5  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    24   1.5  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    23   2.5  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   3.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   4.4  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   5.9  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   5.9  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   7.8  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   7.8  

>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = +3

Query: 462 RRVFHRGHDKQDQSAGERRSRRLQDIRHRLH 554
           + ++HR H K +Q   E    R ++   R H
Sbjct: 52  KSIYHRQHSKNEQQRKEMEQMREREREQREH 82


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -2

Query: 365 EPVASRSPAGLHARQ*ILPLW 303
           EP  + S AG+H ++ +L +W
Sbjct: 51  EPAQTTSKAGIHRKKVLLSVW 71


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -2

Query: 365 EPVASRSPAGLHARQ*ILPLW 303
           EP  + S AG+H ++ +L +W
Sbjct: 173 EPAQTTSKAGIHRKKVLLSVW 193


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 7/54 (12%)
 Frame = +3

Query: 183 AVRCWVEHQNVK----DMFVSEDRGCQ---GQQRSHSADGASQKNQTPQGEYLL 323
           AV CW EHQ+++    +M    DR  Q   G +           N+  + EY+L
Sbjct: 324 AVGCWNEHQSLQRQNLEMVAQNDRTLQMIAGMKIKEELPHFVGSNKPVKDEYML 377


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +2

Query: 587 ILDTFYRCITGVVL 628
           ILDTF  C+T VVL
Sbjct: 312 ILDTFSICVTVVVL 325


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 292 RTKHHKGSIYCLAWSPAGDLLATGSNDKTVKLMAFNT 402
           R + H     CLA SPAG + +   N + V    ++T
Sbjct: 71  RQEVHAQVYSCLARSPAGSVHSRDVNVRAVVAQYYDT 107


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 70  GPTAVGIESSDSRPTFK 120
           GP +VG+ +  S P FK
Sbjct: 173 GPNSVGVSNEVSLPQFK 189


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 70  GPTAVGIESSDSRPTFK 120
           GP +VG+ +  S P FK
Sbjct: 112 GPNSVGVSNEVSLPQFK 128


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -2

Query: 449 SCTVNSTSCPSKLQACVLNAINFT 378
           SCT++ T  P   Q C++   ++T
Sbjct: 150 SCTIDVTYFPFDQQTCIMKFGSWT 173


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 20 LRCRQEMAAHNHLLLS 67
          +RC  E+AA + LLLS
Sbjct: 1  MRCMLEIAARSFLLLS 16


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.134    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,926
Number of Sequences: 438
Number of extensions: 4743
Number of successful extensions: 19
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)