Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23k19
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    24   1.3  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    24   1.3  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    23   1.7  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    23   1.7  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   9.2  

>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 9/18 (50%), Positives = 13/18 (72%), Gaps = 2/18 (11%)
 Frame = +3

Query: 18  YNNF--YNSFMFYKKYIL 65
           YNN+  YN  ++YK YI+
Sbjct: 94  YNNYNNYNKKLYYKNYII 111


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 21  NNFYNSFMFYKKYIL 65
           NN YN  ++YK YI+
Sbjct: 108 NNNYNKKLYYKNYII 122


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 18  YNNFYNSFMFYKKYIL 65
           YNN YN  ++YK YI+
Sbjct: 338 YNN-YNKKLYYKNYII 352


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 18  YNNFYNSFMFYKKYIL 65
           YNN YN  ++YK YI+
Sbjct: 333 YNN-YNKKLYYKNYII 347


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = +1

Query: 490 DLNTITIYFLKFFNMNMYLLYISIIFAF 573
           +L    IYF++   +N Y  ++   F F
Sbjct: 215 NLENKLIYFIEDIGLNTYYFFLRQAFPF 242


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,707
Number of Sequences: 438
Number of extensions: 851
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)