Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23k18
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.02c |hsp16||heat shock protein Hsp16|Schizosaccharomyces...    27   2.4  
SPBC19C2.02 |pmt1||DNA methyltransferase homolog|Schizosaccharom...    25   9.7  
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c...    25   9.7  

>SPBC3E7.02c |hsp16||heat shock protein Hsp16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 143

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -3

Query: 528 EVXLSSEVAGSCRLSSSKHSFRWARRFFSSLLWTSRVPAR 409
           ++ +S EV    +  S++ + RW+ R F S   T  +PA+
Sbjct: 70  KLTISGEVVNERKNESTEGNQRWSERRFGSFSRTITIPAK 109


>SPBC19C2.02 |pmt1||DNA methyltransferase
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 330

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 449 SSPACCGLRGYQHVV 405
           SS  CC  RGY H+V
Sbjct: 232 SSSCCCFTRGYTHLV 246


>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1077

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +2

Query: 137  KSPVIVRSATVMPVTACNGI 196
            ++ ++++S TV  VT CNG+
Sbjct: 1024 RARLVIKSLTVASVTKCNGL 1043


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,312,338
Number of Sequences: 5004
Number of extensions: 16268
Number of successful extensions: 35
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)