Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23k16
         (643 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe...   109   4e-25
SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2...    25   7.0  
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|...    25   9.3  

>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 248

 Score =  109 bits (261), Expect = 4e-25
 Identities = 52/125 (41%), Positives = 75/125 (60%), Gaps = 5/125 (4%)
 Frame = +1

Query: 283 ITLKSIGHQ*Y*RYEYSDF-----NNIEFDSYIIPSNEIKNNEFRLLDVDXXXXXXXXXX 447
           +T+K+IG Q +  YE +DF       + FDSY++P  +++    R L+VD          
Sbjct: 111 MTVKAIGRQWFWSYELNDFVTNENEPVSFDSYMVPEEDLEEGSLRQLEVDNRLVLPIDTR 170

Query: 448 XXXXXTATDVIHS*TIPSLGIKVDANPGRLNQTNFFINRPGIFFGQCSEICGANHSFIPI 627
                T+ DVIHS  +PSLGIK D  P RLNQ +  I+R G+F+GQCSE+CG  HS +PI
Sbjct: 171 IRLILTSGDVIHSWAVPSLGIKCDCIPSRLNQVSLSIDREGLFYGQCSELCGVLHSSMPI 230

Query: 628 VIESI 642
           V++ +
Sbjct: 231 VVQGV 235


>SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 683

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -3

Query: 443 LFIGKIIRLSTSNSRNSLFFISLDGIIYESNSILLKSE 330
           LF+    R +T  SRN+L+FI LD     SN   + SE
Sbjct: 165 LFVRHWDRWNTG-SRNTLYFIELDKKTENSNYFEISSE 201


>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
           5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 736

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -3

Query: 278 GLLSSS-NKYNNRNDGKAMKINVKVGIIVQINSIIC 174
           G LS   NK +N+N  KA  +  K+G+   I  I C
Sbjct: 91  GFLSQQENKSSNQNPSKANNLFDKLGVSKPITFIAC 126


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,845,400
Number of Sequences: 5004
Number of extensions: 30487
Number of successful extensions: 61
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)