Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23k13
         (614 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    26   3.8  
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo...    26   5.0  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    25   6.6  

>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1822

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +1

Query: 493 EVGPDKFSFPSGHASRAVLISFILIY--FDSVSIIFYPPT 606
           +  PDK S     A RA LIS  LIY   +  S +F  PT
Sbjct: 403 QTSPDKVSNIRSQAMRAKLISLHLIYRILEKNSDLFMDPT 442


>SPAC1039.07c |||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +2

Query: 485 SSWKLVLISSHSHPDMQAGLCSSRSF*YTLILYQ*FSTPPLM 610
           +S ++  I  HSHPD+ A  C  ++    + L+  F +PP++
Sbjct: 56  TSGQMSAILGHSHPDITA--CIEKNLPKLVHLFSGFLSPPVV 95


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1502

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 9/38 (23%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +2

Query: 146 LVLWIC*EKQRKS-VKLHPC*KKFCSMMFKLRRHLLTE 256
           ++ W+   + R +   ++PC  ++CS +F+  +H ++E
Sbjct: 716 MMTWLWEIRHRGAFTSVYPCFIEYCSFLFECNKHEISE 753


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,450,606
Number of Sequences: 5004
Number of extensions: 47506
Number of successful extensions: 104
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)