Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23k09
         (558 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom...    25   5.7  
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha...    25   5.7  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   7.5  
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    25   7.5  
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    25   7.5  

>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
 Frame = -2

Query: 464 LKLLHFHSFY*DLTSIKVAPVSAVTVSTGFDXXXXXXXXXXXXXXXSRSTVGDPVV-IAV 288
           ++ L  H+ Y  ++SI   P+  + VS  +D                     +P++ +++
Sbjct: 131 VRCLKGHTNY--VSSIDFNPLGTLLVSGSWDETVRIWNLQDGTCLRMLPAHSEPIISVSI 188

Query: 287 SASGAVTITASGTASARIF 231
           SA G +  TAS    ARI+
Sbjct: 189 SADGTLCATASYDGMARIW 207


>SPAPJ696.01c |vps17||retromer complex subunit
           Vps17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 549

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 232 KILADAVPEAVIVTAPEAETAITTG 306
           K L    PE +I   PEA+T++++G
Sbjct: 147 KYLISTHPECLIPAVPEAKTSVSSG 171


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -1

Query: 375  RFNNHNFFCNYFWLNSF*VNCRRSCGYS-SFSLWGCY 268
            R   +N+ C YFW       C R+  +S S  +W CY
Sbjct: 1489 RIAMNNYLCLYFW--QVLDACPRNVLHSLSLEIWKCY 1523


>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = -1

Query: 387 FYGFRF---NNHNFFCNYFWLNSF*VNCRRSCGYSSFSLWGCYNYSFRYS 247
           F G RF   N H  F  +   NS     R  C ++SFS + C + + +YS
Sbjct: 510 FVGKRFYSTNRHKAFSRFADFNSH----RFPCIFTSFSCYNCISGTRKYS 555


>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 530

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = -2

Query: 113 TSVALAPVEDSIGSFT-TTAGAATIVLEPTDTSSLITS 3
           TS  +APV  S+ S +  +AG+AT  + PT +SS+  S
Sbjct: 193 TSSYVAPVSSSVASSSEISAGSATSYV-PTSSSSIALS 229


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,656,357
Number of Sequences: 5004
Number of extensions: 29018
Number of successful extensions: 74
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)