Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23k09
         (558 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69664-5|CAE17882.2|  360|Caenorhabditis elegans Hypothetical pr...    30   0.98 
AF039053-3|AAC25880.2|  349|Caenorhabditis elegans Hypothetical ...    28   4.0  
Z99288-1|CAB16545.2|  339|Caenorhabditis elegans Hypothetical pr...    27   6.9  
Z81086-2|CAB03121.3| 1045|Caenorhabditis elegans Hypothetical pr...    27   6.9  
AF106573-5|AAF02104.2|  358|Caenorhabditis elegans Seven tm rece...    27   6.9  
U07628-1|AAA17738.1|  515|Caenorhabditis elegans APX-1 protein.        27   9.1  
AF101319-2|AAC69353.4|  515|Caenorhabditis elegans Anterior phar...    27   9.1  

>Z69664-5|CAE17882.2|  360|Caenorhabditis elegans Hypothetical
           protein K04D7.6 protein.
          Length = 360

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 22/44 (50%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -2

Query: 140 ELTNASSLITSVALAP--VEDSIGSFTTTAGAATIVLEPTDTSS 15
           E T    LI   AL P   E SI   TTTA A  IV EPT +SS
Sbjct: 258 EATPVFILIAFGALMPDLKEWSISKTTTTAEATIIVTEPTSSSS 301


>AF039053-3|AAC25880.2|  349|Caenorhabditis elegans Hypothetical
           protein C45H4.13 protein.
          Length = 349

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 384 YGFRFNNHNFFCNYFWLNSF*VNCRRSCGYSSFSLWG 274
           YG+ +NN+ +  NY+  NS+     RSC   S+S  G
Sbjct: 311 YGYGYNNNYYSGNYYCCNSY-----RSCWRQSYSCSG 342


>Z99288-1|CAB16545.2|  339|Caenorhabditis elegans Hypothetical
           protein ZK262.1 protein.
          Length = 339

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 414 SCSGFCSDSFYGFRFNNHNFFCNYFWL 334
           SC  F + S  G   N  N FCN+FW+
Sbjct: 107 SCQ-FLTISIAGIFENRFNTFCNFFWV 132


>Z81086-2|CAB03121.3| 1045|Caenorhabditis elegans Hypothetical
           protein F53B6.2a protein.
          Length = 1045

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = -1

Query: 168 CSGFYFNSFRAHQCLVINYFGSTCSR*RLNW-IIYNHSRCCNN 43
           C G   +SFR   C V    G TC   +  W +   ++ C +N
Sbjct: 135 CDGLISSSFRFDACGVCGGRGDTCDNGKFIWKVSEEYTACASN 177


>AF106573-5|AAF02104.2|  358|Caenorhabditis elegans Seven tm
           receptor protein 79 protein.
          Length = 358

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 17/54 (31%), Positives = 23/54 (42%)
 Frame = -1

Query: 369 NNHNFFCNYFWLNSF*VNCRRSCGYSSFSLWGCYNYSFRYSICENFRTQILWRF 208
           N  NF C   W+          CGYS  SL     ++FR+ +  N    + WRF
Sbjct: 85  NRFNFPCLGVWM--LLATNWICCGYSILSLNA--QFAFRWIVMSNSGKNLFWRF 134


>U07628-1|AAA17738.1|  515|Caenorhabditis elegans APX-1 protein.
          Length = 515

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = -2

Query: 137 LTNASSLITSVALAPVEDSIGSFT---TTAGAATIVLEPT 27
           +TN SSL+T++ L  +  + GS T     +   T+++EPT
Sbjct: 1   MTNFSSLLTTIFLCIISSATGSGTIELLISSPQTVLVEPT 40


>AF101319-2|AAC69353.4|  515|Caenorhabditis elegans Anterior pharynx
           in excess protein1 protein.
          Length = 515

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = -2

Query: 137 LTNASSLITSVALAPVEDSIGSFT---TTAGAATIVLEPT 27
           +TN SSL+T++ L  +  + GS T     +   T+++EPT
Sbjct: 1   MTNFSSLLTTIFLCIISSATGSGTIELLISSPQTVLVEPT 40


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,200,151
Number of Sequences: 27780
Number of extensions: 171480
Number of successful extensions: 470
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)