Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23k08
         (127 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81524-5|CAB04253.2|  283|Caenorhabditis elegans Hypothetical pr...    25   9.8  
AC024776-19|AAK68480.2|  398|Caenorhabditis elegans Hypothetical...    25   9.8  

>Z81524-5|CAB04253.2|  283|Caenorhabditis elegans Hypothetical
           protein F32H5.5 protein.
          Length = 283

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 36  NYYLELNKFPT*IMLFLTIFLNKLTK 113
           +YY       T I L LTI+L +LTK
Sbjct: 151 DYYAFTMNIETVIYLLLTIYLGRLTK 176


>AC024776-19|AAK68480.2|  398|Caenorhabditis elegans Hypothetical
           protein Y41D4B.6 protein.
          Length = 398

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = +3

Query: 12  ETPLQIRINYYLELNKFPT 68
           + PL++ I+Y ++L+K PT
Sbjct: 146 DNPLKVDIDYSIDLSKLPT 164


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,527,306
Number of Sequences: 27780
Number of extensions: 25131
Number of successful extensions: 35
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 12,740,198
effective HSP length: 22
effective length of database: 12,129,038
effective search space used: 230451722
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)