Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt23k04
(675 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 40 2e-04
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||... 34 0.022
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha... 33 0.029
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 33 0.050
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S... 27 3.3
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 26 4.3
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 26 4.3
SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 26 5.7
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 40.3 bits (90), Expect = 2e-04
Identities = 35/100 (35%), Positives = 47/100 (47%)
Frame = +2
Query: 344 LSENSFTNVTLMADLSIEILNLSRCKIDVIENASFKELQEMRVLDLSYNKLTAAKLSPHA 523
+ E SFTN L +E L L +I+ IE S LQ + VL L NKLT K S
Sbjct: 724 IKELSFTNSNLHR---LEELLLGNNEIEEIEEIS--SLQNLMVLQLDNNKLTNLKAS--- 775
Query: 524 FEGKYTPEQYEPLAAMRVLNLAYNDLHSLNQDLFEHLPQL 643
+P+ +R+L ++ N +H L D F HL L
Sbjct: 776 ----------QPMIHLRILRISNNAIHQLEVDQFPHLRTL 805
Score = 30.7 bits (66), Expect = 0.20
Identities = 29/113 (25%), Positives = 48/113 (42%), Gaps = 3/113 (2%)
Frame = +2
Query: 344 LSENSFTNVTLM-ADLSIEILNLSRCKIDVIENASFKELQEMRVLDLSYNKLTAAKLSPH 520
LS N+F + L + L L+ ++ + + +RVLDLS+N ++
Sbjct: 852 LSNNTFVTLDCKHMFLGVRYLELANVQLKEVPKYIATSMPNLRVLDLSHNYISDI----- 906
Query: 521 AFEGKYTPEQYEPLAAMRVLNLAYNDLHSLNQ--DLFEHLPQLEELDISGNPL 673
E +PL + L L N + + D+ +L QL LD+ NPL
Sbjct: 907 --------ESLKPLQMIHRLYLVGNRIKKMRNLCDILANLKQLNVLDLRMNPL 951
Score = 26.2 bits (55), Expect = 4.3
Identities = 15/61 (24%), Positives = 30/61 (49%)
Frame = +2
Query: 314 LADFKPKIVDLSENSFTNVTLMADLSIEILNLSRCKIDVIENASFKELQEMRVLDLSYNK 493
L++ P I +L+ + + + I +L+ + + SF L ++ LD+SYN+
Sbjct: 621 LSELCPSIEELTLEG-NEIAYLTGCPVTIRDLNAVENRLSSLTSFSNLLNLQYLDISYNQ 679
Query: 494 L 496
L
Sbjct: 680 L 680
>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1116
Score = 33.9 bits (74), Expect = 0.022
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +2
Query: 518 HAFEGKYTPEQYEPLAAMRVLNLAYNDLHSLNQDLFEHLPQLEELDISGNP 670
H K++ ++P A+ + N + +L++ FE P L+E D+SG+P
Sbjct: 578 HNEASKFSHTSFDPKASSKSSNSLKESVEALSEIPFEDAPALDESDLSGDP 628
>SPAC926.06c |||leucine-rich repeat protein,
unknown|Schizosaccharomyces pombe|chr 1|||Manual
Length = 621
Score = 33.5 bits (73), Expect = 0.029
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 13/104 (12%)
Frame = +2
Query: 401 LNLSRCKIDVIENASFKELQEMRVLDLSYNKLT-------------AAKLSPHAFEGKYT 541
L S CK+ I F LQ + LDLS N+LT + L+ + G T
Sbjct: 337 LRCSSCKLKSIPKNVFLSLQSLVSLDLSGNELTEIPYALGELPQLCSLNLASNKITGCRT 396
Query: 542 PEQYEPLAAMRVLNLAYNDLHSLNQDLFEHLPQLEELDISGNPL 673
+ L+ +++L L+ N L SL+ E++P LE+LDI N +
Sbjct: 397 -FYHISLSHLQILVLSRNHLTSLSG--LENVPSLEKLDIRDNSI 437
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 32.7 bits (71), Expect = 0.050
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +2
Query: 554 EPLAAMRVLNLAYNDLHSLNQDLFEHLPQLEELDISGNPL 673
E ++VLNL+YN L + F++ L+ L +SGN L
Sbjct: 827 EYFKCLKVLNLSYNYLTEIPSKFFQNFSDLKHLFVSGNEL 866
Score = 30.7 bits (66), Expect = 0.20
Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 14/105 (13%)
Frame = +2
Query: 401 LNLSRCKIDVIENASFKELQEMRVLDLSYNKLT---------AAKLSPHAFEGKYTPEQY 553
L++SR ++VI + E+ L++S+N KL +
Sbjct: 410 LDISRSNLEVIPVKIYPYAHELISLNVSHNLSLDLPLDFMERCVKLKRLDISNNLRSPRG 469
Query: 554 EPLAAMR---VLNLAYNDLHSLNQDLFEHLPQ--LEELDISGNPL 673
+P+ A+R VLN++ ND++ L+ +F L + L+EL+I+ N L
Sbjct: 470 KPITALRQLEVLNMSRNDIYELDPLIFSGLSRNSLKELNIANNKL 514
Score = 30.7 bits (66), Expect = 0.20
Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 16/108 (14%)
Frame = +2
Query: 392 IEILNLSRCKIDVIENASFKELQEMRVLDLSYNKLTAAKLSPHA---FEGKYT------- 541
+++LNLS + I + F+ +++ L +S N+L +S A E Y
Sbjct: 832 LKVLNLSYNYLTEIPSKFFQNFSDLKHLFVSGNELANLSISSTAQVLLETLYANGNRLSS 891
Query: 542 -PEQYEPLAAMRVLNLAYNDLHSLNQDLFEH-----LPQLEELDISGN 667
P+ ++R L+++ N+L +L + E LPQLE L++SGN
Sbjct: 892 FPKNEALSKSLRFLDISTNNLQNLAVEKAEKKSLTKLPQLEYLNLSGN 939
>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
E|Schizosaccharomyces pombe|chr 1|||Manual
Length = 511
Score = 26.6 bits (56), Expect = 3.3
Identities = 27/93 (29%), Positives = 47/93 (50%)
Frame = +2
Query: 389 SIEILNLSRCKIDVIENASFKELQEMRVLDLSYNKLTAAKLSPHAFEGKYTPEQYEPLAA 568
S+E+L L +I + + SFK LQ ++ L L+ N L+ ++ +G Y + ++
Sbjct: 218 SLEVLYLEANEIILSKATSFKNLQFLQTLSLANN------LNLYSADG-YAVDVFQ---G 267
Query: 569 MRVLNLAYNDLHSLNQDLFEHLPQLEELDISGN 667
+ LNL+ L + + L +L LDIS N
Sbjct: 268 INNLNLSSTSLADVAELPVHTLHKLTFLDISEN 300
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 26.2 bits (55), Expect = 4.3
Identities = 21/95 (22%), Positives = 41/95 (43%)
Frame = +2
Query: 272 QNLDTFFSKEEWAALADFKPKIVDLSENSFTNVTLMADLSIEILNLSRCKIDVIENASFK 451
Q + ++ EW L+ F+P I + + V +A LS+ L L K+ + K
Sbjct: 950 QYAQPYGNENEWTGLSQFEPLIFKCTASRICKVREIASLSLTCL-LDCSKMTTFIVSQLK 1008
Query: 452 ELQEMRVLDLSYNKLTAAKLSPHAFEGKYTPEQYE 556
+ ++ ++ + KL + F K T +Q +
Sbjct: 1009 GVAGLQQNEI-HGKLLTIRAVLSCFFSKLTLQQVQ 1042
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 26.2 bits (55), Expect = 4.3
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
Frame = +2
Query: 365 NVTLMADLSIEILNLSRCKIDVIENASFKELQEMRVLDLSYNKLTAA----KLSPHAFEG 532
N LM L+ +I L R DV + E +E ++ KL+A+ A E
Sbjct: 654 NTNLMEILNDKISVLQRQLTDVKDELDVSE-EEREEAIVAGQKLSASFELMSNEKQALEL 712
Query: 533 KYTPEQYEPLAAMRVLNLAYNDLHSLNQDLFE 628
KY+ + E + A +L+ +L L++ LFE
Sbjct: 713 KYSSLKNELINAQNLLDRREEELSELSKKLFE 744
>SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 140
Score = 25.8 bits (54), Expect = 5.7
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +2
Query: 89 IFKKMGWAVAIFVFLFIAGAHC-EDVK 166
+FKK W ++VFLFI A+C DVK
Sbjct: 26 VFKKTQW--LLYVFLFIIFANCVVDVK 50
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,628,125
Number of Sequences: 5004
Number of extensions: 51233
Number of successful extensions: 176
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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