Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23k04
         (675 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    44   1e-06
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.0  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   6.1  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 44.4 bits (100), Expect = 1e-06
 Identities = 37/116 (31%), Positives = 59/116 (50%), Gaps = 3/116 (2%)
 Frame = +2

Query: 335 IVDLSENSFTNVT--LMADLS-IEILNLSRCKIDVIENASFKELQEMRVLDLSYNKLTAA 505
           +++LS N  T++   +  DL  ++IL+L    ID IE+ +F  L  +  L+LS NKL   
Sbjct: 339 VLNLSYNMLTHIDARMFKDLFFLQILDLRNNSIDRIESNAFLPLYNLHTLELSDNKLRT- 397

Query: 506 KLSPHAFEGKYTPEQYEPLAAMRVLNLAYNDLHSLNQDLFEHLPQLEELDISGNPL 673
            +    F G         L  +  L L+ N + S++   F +   L+ELD+SGN L
Sbjct: 398 -VGAQLFNG---------LFVLNRLTLSGNAIASIDPLAFRNCSDLKELDLSGNEL 443



 Score = 40.7 bits (91), Expect = 1e-05
 Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 4/118 (3%)
 Frame = +2

Query: 332 KIVDLSENSFTNV---TLMADL-SIEILNLSRCKIDVIENASFKELQEMRVLDLSYNKLT 499
           +I+DLS N  T +   + + DL  ++ L+L R  I  I   +   L  +R  + SYN L 
Sbjct: 215 RILDLSRNEITRLQENSPLLDLRQLQELHLQRNAIVEIAGDALTGLTVLRTFNASYNSLD 274

Query: 500 AAKLSPHAFEGKYTPEQYEPLAAMRVLNLAYNDLHSLNQDLFEHLPQLEELDISGNPL 673
           +        EG +   +      +R ++LAYN L  L + +F  L QL  L+++GN L
Sbjct: 275 SLP------EGLFASTR-----DLREIHLAYNGLRDLPKGIFTRLEQLLVLNLAGNRL 321



 Score = 37.5 bits (83), Expect = 1e-04
 Identities = 30/110 (27%), Positives = 51/110 (46%)
 Frame = +2

Query: 344 LSENSFTNVTLMADLSIEILNLSRCKIDVIENASFKELQEMRVLDLSYNKLTAAKLSPHA 523
           L  +     T +  + + +LNLS   +  I+   FK+L  +++LDL  N +   ++  +A
Sbjct: 321 LGSDRVDETTFLGLIRLIVLNLSYNMLTHIDARMFKDLFFLQILDLRNNSID--RIESNA 378

Query: 524 FEGKYTPEQYEPLAAMRVLNLAYNDLHSLNQDLFEHLPQLEELDISGNPL 673
           F          PL  +  L L+ N L ++   LF  L  L  L +SGN +
Sbjct: 379 F---------LPLYNLHTLELSDNKLRTVGAQLFNGLFVLNRLTLSGNAI 419



 Score = 35.9 bits (79), Expect = 4e-04
 Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 2/114 (1%)
 Frame = +2

Query: 332 KIVDLSENSFTNVT-LMADLSI-EILNLSRCKIDVIENASFKELQEMRVLDLSYNKLTAA 505
           K +DLS N  T+V   + DL++ + L+L   +I    N SF+ L ++  L L  N +   
Sbjct: 434 KELDLSGNELTSVPDALRDLALLKTLDLGENRISNFYNGSFRNLDQLTGLRLIGNDI--- 490

Query: 506 KLSPHAFEGKYTPEQYEPLAAMRVLNLAYNDLHSLNQDLFEHLPQLEELDISGN 667
                   G  +      L  +++LNLA N +  + +  FE   +LE + + GN
Sbjct: 491 --------GNLSRGMLWDLPNLQILNLARNKVQHVERYAFERNMRLEAIRLDGN 536



 Score = 33.1 bits (72), Expect = 0.002
 Identities = 23/76 (30%), Positives = 41/76 (53%)
 Frame = +2

Query: 446 FKELQEMRVLDLSYNKLTAAKLSPHAFEGKYTPEQYEPLAAMRVLNLAYNDLHSLNQDLF 625
           F  L+++ VL+L+ N+L + ++    F G         L  + VLNL+YN L  ++  +F
Sbjct: 305 FTRLEQLLVLNLAGNRLGSDRVDETTFLG---------LIRLIVLNLSYNMLTHIDARMF 355

Query: 626 EHLPQLEELDISGNPL 673
           + L  L+ LD+  N +
Sbjct: 356 KDLFFLQILDLRNNSI 371



 Score = 27.9 bits (59), Expect = 0.094
 Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 14/85 (16%)
 Frame = +2

Query: 461 EMRVLDLSYNKLTAAKLSPHAFEGKYTPEQY--------------EPLAAMRVLNLAYND 598
           ++R+LDLS N++T  + +    + +   E +                L  +R  N +YN 
Sbjct: 213 DIRILDLSRNEITRLQENSPLLDLRQLQELHLQRNAIVEIAGDALTGLTVLRTFNASYNS 272

Query: 599 LHSLNQDLFEHLPQLEELDISGNPL 673
           L SL + LF     L E+ ++ N L
Sbjct: 273 LDSLPEGLFASTRDLREIHLAYNGL 297


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 132 SSSLELIVKTLKHLEPAPTLLQDHL 206
           S+ + LIV    H+E  P LL  HL
Sbjct: 320 SAEIRLIVTAPLHVEVTPPLLSVHL 344


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 132 SSSLELIVKTLKHLEPAPTLLQDHL 206
           S+ + LIV    H+E  P LL  HL
Sbjct: 320 SAEIRLIVTAPLHVEVTPPLLSVHL 344


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -3

Query: 307 PFFFTEERVQILIVTINF 254
           PFF+ +E   + +V +NF
Sbjct: 380 PFFYVQEDDDVKLVLLNF 397


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,197
Number of Sequences: 438
Number of extensions: 3494
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)