Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23k02
         (225 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1 |Sc...    25   1.8  
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    24   3.1  
SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe...    23   4.1  
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po...    23   7.2  
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    22   9.5  
SPAC688.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    22   9.5  

>SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 215

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 96  FVYVITTYRQSFPRYQFSS 152
           F+Y++ T   S+P + FSS
Sbjct: 65  FMYIVATLNASYPDHDFSS 83


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1213

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 129  FPRYQFSSRNHEFIIYIFFCDIK*NL 206
            F RY FS   H F++ IF C +  NL
Sbjct: 1016 FLRYLFS---HSFLVIIFACSVILNL 1038


>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 248

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +3

Query: 51  LNHLIMFLIFFLINVFVYVITTYRQSFPRYQFSS 152
           + HL  +L+F+L  +F+ VI    ++   Y ++S
Sbjct: 30  VTHLNDYLMFYLTFIFIGVIYAICKAVIEYNYNS 63


>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 875

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 129 FPRYQFSSRNHEFIIYIFFCD 191
           FP Y F +  +++ I   FCD
Sbjct: 666 FPVYAFGAHENQWRIATIFCD 686


>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 182 KNVNYKFMISARKLVSGKRLAISSY 108
           KN N  F++S+  L S  R   +SY
Sbjct: 305 KNTNSNFLLSSPSLFSDTRTRPASY 329


>SPAC688.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 167

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +3

Query: 72  LIFFLINVFVYVITTYRQSFPRYQFSSRNH 161
           L  FLI  F+ +I  Y+   P    + RN+
Sbjct: 24  LAIFLIGAFINLIHIYKPKGPSNNPTKRNY 53


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 832,625
Number of Sequences: 5004
Number of extensions: 13718
Number of successful extensions: 21
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 2,362,478
effective HSP length: 54
effective length of database: 2,092,262
effective search space used: 41845240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)