Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt23k02
(225 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132846-4|CAB60347.1| 328|Caenorhabditis elegans Hypothetical ... 26 4.1
Z99278-1|CAB16490.1| 793|Caenorhabditis elegans Hypothetical pr... 25 5.5
Z82276-1|CAB05238.1| 319|Caenorhabditis elegans Hypothetical pr... 25 5.5
Z77132-6|CAB00861.3| 1406|Caenorhabditis elegans Hypothetical pr... 25 7.2
Z66561-7|CAB54206.2| 419|Caenorhabditis elegans Hypothetical pr... 25 7.2
AJ276018-1|CAC81666.1| 1122|Caenorhabditis elegans putative TRP ... 25 7.2
AF304127-1|AAG50240.1| 419|Caenorhabditis elegans innexin protein. 25 7.2
AF036705-9|AAO91724.1| 686|Caenorhabditis elegans Hypothetical ... 25 7.2
AC024825-1|ABA00169.1| 1908|Caenorhabditis elegans Plexin protei... 25 7.2
AB080022-1|BAB85224.1| 1951|Caenorhabditis elegans plexin A prot... 25 7.2
AL132865-16|CAE18036.1| 197|Caenorhabditis elegans Hypothetical... 25 9.6
>AL132846-4|CAB60347.1| 328|Caenorhabditis elegans Hypothetical
protein Y43D4A.6 protein.
Length = 328
Score = 25.8 bits (54), Expect = 4.1
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 104 IHEHIY*KKNQKHN*MIKLLGRSVT*SFQVLVQ 6
I + Y +KN KH ++K+ G S+ F L Q
Sbjct: 51 IQQEYYIQKNMKHKNIVKMYGMSMDTEFCYLFQ 83
>Z99278-1|CAB16490.1| 793|Caenorhabditis elegans Hypothetical
protein Y53C12B.1 protein.
Length = 793
Score = 25.4 bits (53), Expect = 5.5
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -2
Query: 200 LFNVTKKNVNYKFMISARKLVSGKRLAISS 111
LF V ++ V +F+I KLV KR+A S+
Sbjct: 249 LFTVGEEGVVKEFVIETAKLVRKKRIASSN 278
>Z82276-1|CAB05238.1| 319|Caenorhabditis elegans Hypothetical
protein K03D3.1 protein.
Length = 319
Score = 25.4 bits (53), Expect = 5.5
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +3
Query: 54 NHLIMFLIFFLINVFVYVITTYRQSFPRYQFSSRNHEFIIYIF 182
N LI L F + VF++ + ++F F F+IY F
Sbjct: 93 NGLICALCFAIAVVFIFTLYLLTEAFHLITFLLALQRFLIYFF 135
>Z77132-6|CAB00861.3| 1406|Caenorhabditis elegans Hypothetical protein
F54D1.5 protein.
Length = 1406
Score = 25.0 bits (52), Expect = 7.2
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 72 LIFFLINVFVYVITTYRQSFPRYQFSSRNHEFIIYIF 182
L+FFL+ ++ YR S+ R S N F + IF
Sbjct: 976 LLFFLVGYGFRLVPMYRHSWGRVLLSFSNVLFYMKIF 1012
>Z66561-7|CAB54206.2| 419|Caenorhabditis elegans Hypothetical
protein F08G12.10 protein.
Length = 419
Score = 25.0 bits (52), Expect = 7.2
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +3
Query: 51 LNHLI--MFLIFFLINVFVYVITTYRQSFPRYQFSSRNHEFI 170
LN +I +++ F+ +FV+V+TT +Q R H I
Sbjct: 263 LNMIIEKLYICFYFWLIFVFVVTTAGMIHFAFQILFRRHSLI 304
>AJ276018-1|CAC81666.1| 1122|Caenorhabditis elegans putative TRP
homologous cationchannel protein.
Length = 1122
Score = 25.0 bits (52), Expect = 7.2
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 72 LIFFLINVFVYVITTYRQSFPRYQFSSRNHEFIIYIF 182
L+FFL+ ++ YR S+ R S N F + IF
Sbjct: 692 LLFFLVGYGFRLVPMYRHSWGRVLLSFSNVLFYMKIF 728
>AF304127-1|AAG50240.1| 419|Caenorhabditis elegans innexin protein.
Length = 419
Score = 25.0 bits (52), Expect = 7.2
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +3
Query: 51 LNHLI--MFLIFFLINVFVYVITTYRQSFPRYQFSSRNHEFI 170
LN +I +++ F+ +FV+V+TT +Q R H I
Sbjct: 263 LNMIIEKLYICFYFWLIFVFVVTTAGMIHFAFQILFRRHSLI 304
>AF036705-9|AAO91724.1| 686|Caenorhabditis elegans Hypothetical
protein F37C4.2 protein.
Length = 686
Score = 25.0 bits (52), Expect = 7.2
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +3
Query: 81 FLINVFVYVITTYRQSFPRYQFSS 152
F+I + VY++ T + ++P YQ S
Sbjct: 204 FMIGMVVYLLGTTKPTYPHYQVLS 227
>AC024825-1|ABA00169.1| 1908|Caenorhabditis elegans Plexin protein 1
protein.
Length = 1908
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +3
Query: 60 LIMFLIFFLINVFVYVITTYRQSFPRYQ 143
+IMF I F+I + + +I YR+ +Q
Sbjct: 1261 IIMFFIIFMIALIICLIVLYRRKSNTHQ 1288
>AB080022-1|BAB85224.1| 1951|Caenorhabditis elegans plexin A protein.
Length = 1951
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +3
Query: 60 LIMFLIFFLINVFVYVITTYRQSFPRYQ 143
+IMF I F+I + + +I YR+ +Q
Sbjct: 1267 IIMFFIIFMIALIICLIVLYRRKSNTHQ 1294
>AL132865-16|CAE18036.1| 197|Caenorhabditis elegans Hypothetical
protein Y62E10A.19 protein.
Length = 197
Score = 24.6 bits (51), Expect = 9.6
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 66 MFLIFFLINVFVYVITTYRQSFPRYQFSSRN 158
M I F + + V V+TT FP F S+N
Sbjct: 1 MIRIAFAVLILVSVVTTQPLLFPHGWFESKN 31
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,481,898
Number of Sequences: 27780
Number of extensions: 75332
Number of successful extensions: 215
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 12,740,198
effective HSP length: 54
effective length of database: 11,240,078
effective search space used: 224801560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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