Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23k01
         (512 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces pomb...    29   0.41 
SPAC869.10c |||proline specific permease |Schizosaccharomyces po...    28   0.71 
SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|...    27   1.6  
SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF comple...    27   2.2  
SPAC6F12.13c |fps1||geranyltranstransferase Fps1|Schizosaccharom...    25   5.0  

>SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 29.1 bits (62), Expect = 0.41
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +3

Query: 159 ECCGNTGAINYGQFTLPESCCVKKSILSTFAGNNCTVDAANPGC 290
           +C G+     YGQ      C    S++S  AG N T+  A   C
Sbjct: 302 DCSGHGRCSKYGQLDSCYVCQCSNSVVSNAAGQNKTIRWAGESC 345


>SPAC869.10c |||proline specific permease |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 552

 Score = 28.3 bits (60), Expect = 0.71
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
 Frame = +3

Query: 204 LPESCCVKKSILSTFAGNNCTVDAANPGCGPKIGELYQKWNKPIAGVALGV--ACVEVVG 377
           L  +C    S L  FAG+      A     PKI +   +W  P+  VA+ V  AC+  + 
Sbjct: 342 LTSACSSGNSFL--FAGSRSIYSLAKEHQAPKIFKYCNRWGVPVISVAVTVLFACLAFLN 399

Query: 378 A 380
           A
Sbjct: 400 A 400


>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1018

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 57  ESIMDGVGVLFKKRSDANADEAAEAVFSELQRQ-FECC 167
           ESI+  + V FK+R+D N  E     F EL +Q F  C
Sbjct: 588 ESIVQSLSVAFKERNDRNEQE-IPFFFEELLKQLFTLC 624


>SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF complex
           beta subunit Tfg2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 19/53 (35%), Positives = 20/53 (37%)
 Frame = +3

Query: 309 LYQKWNKPIAGVALGVACVEVVGALFALCLANSIRNMDRRSRY*YFVHYKLVR 467
           L  KWN      A  + CV V      L L NS  N D    Y   V  K VR
Sbjct: 41  LMDKWNSIPEDDAANLGCVRVKNDEIQLLLQNSPENADVPKIYNLRVMNKFVR 93


>SPAC6F12.13c |fps1||geranyltranstransferase
           Fps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 347

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
 Frame = +3

Query: 96  RSDANADEAAEAVFSEL--QRQFECCGNTGAINYGQFT--LPESCCVKKSILSTFAG 254
           R D+ +++  +AVF EL  + +FE    +      +    + ES  +KKSI +TF G
Sbjct: 284 RKDSESEKRVKAVFEELNIRGEFENYEESEVSEIKKLIDGVDESTGLKKSIFTTFLG 340


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,824,843
Number of Sequences: 5004
Number of extensions: 32611
Number of successful extensions: 109
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)