Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23j23
         (563 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    26   3.3  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    26   4.4  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    25   7.7  
SPAC1071.11 |||NADH-dependent flavin oxidoreductase |Schizosacch...    25   7.7  

>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1462

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 152  YRNQRPVCGTDGKTYNNECLLDC 220
            Y N  P C TD +  +  C +DC
Sbjct: 955  YANDEPPCPTDEEIQHTLCTIDC 977


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
            homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
 Frame = -2

Query: 271  RAGSLISDP*TGIISGGTVEQALVVVCFPISSAHWSLVSIART-AWWICKCCNHL 110
            RA + + +   G+++G +  + L+V C  +S+A   LV+ +R  A +  K  +HL
Sbjct: 959  RATTTLIETADGVVNGTSSFEHLIVACNGVSAATAQLVAASRVKANFASKVQDHL 1013


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 188  SHQFRTLVAGFYSTHSLVDMQVLQS 114
            SH+ RT  +GFY   SL+D   L S
Sbjct: 1794 SHELRTPFSGFYGMLSLLDDTNLDS 1818


>SPAC1071.11 |||NADH-dependent flavin oxidoreductase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 244

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 303 QWHAGKPTFPSEQGP*YLTLRPGSSLVAQSSRHSLLY 193
           Q H   P   SE+    +   PGS+   Q+S HSLL+
Sbjct: 126 QKHQINPLMNSEKNSTSVEDLPGSNRTQQTSSHSLLH 162


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,143,556
Number of Sequences: 5004
Number of extensions: 42220
Number of successful extensions: 105
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)