Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt23j07
(503 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p... 51 1e-07
SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces ... 41 9e-05
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c... 36 0.005
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo... 34 0.011
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch... 32 0.043
SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|c... 31 0.098
SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr 3|... 29 0.52
SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr... 27 1.6
SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c... 26 2.8
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ... 26 2.8
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ... 26 3.7
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 25 6.5
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S... 25 6.5
SPAC607.05 |rpn9||19S proteasome regulatory subunit Rpn9|Schizos... 25 6.5
SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces pomb... 25 6.5
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 25 8.5
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p... 25 8.5
>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 555
Score = 50.8 bits (116), Expect = 1e-07
Identities = 37/100 (37%), Positives = 54/100 (54%), Gaps = 6/100 (6%)
Frame = +2
Query: 140 SAWEISLLGSLPN----FGALLASPFCGLAFNILGRKYATIFFGLPYVIT-WTIISLTDN 304
SAW +LL N FGA+L+SPF +G+KY+ FF Y+I +++ +
Sbjct: 54 SAWRQALLTGTINAGCLFGAMLSSPFT----ERIGKKYSICFFSGVYIIAELLLVTAVPS 109
Query: 305 VILVLVAMSIAGVGVAGQNV-AIIYVSEIAHDSIRGGLTA 421
I VLV +AGVG+ +V + Y SE+A IRG + A
Sbjct: 110 WIQVLVGKILAGVGIGALSVLSPGYQSEVAPPQIRGAVVA 149
>SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 557
Score = 41.1 bits (92), Expect = 9e-05
Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 6/100 (6%)
Frame = +2
Query: 140 SAWEISLLGSLPN----FGALLASPFCGLAFNILGRKYATIFFGLPYVI-TWTIISLTDN 304
SAW +LL N FGA+L+SPF +G+KY+ FF Y+I +++ +
Sbjct: 54 SAWRQALLTGTVNAGCLFGAMLSSPFT----EAIGKKYSIAFFSGCYIIGQILLVTAVPS 109
Query: 305 VILVLVAMSIAGVGVAGQNV-AIIYVSEIAHDSIRGGLTA 421
+ ++V G+ + +V + Y SE+A IRG + +
Sbjct: 110 WVQIMVGKLFTGLTIGALSVLSPGYQSEVAPPQIRGAVVS 149
>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 599
Score = 35.5 bits (78), Expect = 0.005
Identities = 30/113 (26%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Frame = +2
Query: 155 SLLGSLPNFGALLASPFCGLAFNILGRK---YATIFFGLPYVITWTIISLTDNVILVLVA 325
S +GS + P G+ NILGRK Y IFF +++ + + N+I ++V
Sbjct: 134 SWIGSAYVLASNAVLPAVGVFCNILGRKIVLYICIFF---FMLGSALCGASQNMIWLIVC 190
Query: 326 MSIAGVGVAG-QNVAIIYVSEIAHDSIRGGLTAFSSSGYIIGLLTSYILGGKL 481
+I G+G G ++ I +S+I R + ++ + L+ I+GG +
Sbjct: 191 RAIQGLGGGGIISLVNIIISDITPLRTRPMYSGILATAWGAALVAGPIIGGAI 243
>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
Itr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 575
Score = 34.3 bits (75), Expect = 0.011
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Frame = +2
Query: 167 SLPNFGALLASPFCGLAFNILGRKYATIFFGLPYVITWTIISLTDNVIL-VLVAMSIAGV 343
S + GALL G + GRK I +I +I+ +T + + ++V + G
Sbjct: 134 SATSLGALLGGIIAGALADFFGRK-PVIAIASIIIIVGSIVQVTAHHLWHMIVGRFVIGW 192
Query: 344 GVAGQNVAI-IYVSEIAHDSIRGGL 415
GV ++ I +Y+SEIA IRG L
Sbjct: 193 GVGIASLIIPLYLSEIAPSKIRGRL 217
>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 589
Score = 32.3 bits (70), Expect = 0.043
Identities = 19/111 (17%), Positives = 49/111 (44%), Gaps = 1/111 (0%)
Frame = +2
Query: 155 SLLGSLPNFGALLASPFCGLAFNILGRKYATIFFGLPYVITWTIISLTDNVILVLVAMSI 334
S +G+ + PFCG+ ++GRK + ++ + N++ +++ ++
Sbjct: 128 SWIGTAYSLAETSILPFCGIMSEVVGRKIVLYTSIVLFLFGSAMCGAAQNMLWLVLCRAV 187
Query: 335 AGVGVAG-QNVAIIYVSEIAHDSIRGGLTAFSSSGYIIGLLTSYILGGKLT 484
G+G G ++ I +++I R T + + + ++GG ++
Sbjct: 188 QGIGGGGIMSLVTIVIADITPLQTRPYYTGCMGVTWGVASVMGPLIGGAIS 238
>SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 589
Score = 31.1 bits (67), Expect = 0.098
Identities = 17/96 (17%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
Frame = +2
Query: 200 PFCGLAFNILGRKYATIFFGLPYVITWTIISLTDNVILVLVAMSIAGVGVAG-QNVAIIY 376
PFCG+ ++GRK + ++ + N++ +++ ++ G+G G ++ I
Sbjct: 143 PFCGIMSEVVGRKIVLYTSIVLFLFGSAMCGAAQNMLWLVLCRAVQGIGGGGITSLVTIV 202
Query: 377 VSEIAHDSIRGGLTAFSSSGYIIGLLTSYILGGKLT 484
+++I R T + + + ++GG ++
Sbjct: 203 IADITPLQTRPYYTGCMGVTWGLASVMGPLIGGAIS 238
>SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr
3|||Manual
Length = 565
Score = 28.7 bits (61), Expect = 0.52
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +2
Query: 293 LTDNVILVLVAMSIAGVGVAGQNVAIIYVSEIAHDSIRGGLTAFSSSGYII 445
LT+ I++ A AGVG+A Q VA + ++ D RG L G ++
Sbjct: 295 LTEQRIMIFGA-GTAGVGIANQIVAGMVTDGLSLDKARGNLFMIDRCGLLL 344
>SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 652
Score = 27.1 bits (57), Expect = 1.6
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 214 RLQHFRKKIRYDILRSTLRDHMDNNISYG*CD 309
R+ F +KI D+ R R HM N +++ CD
Sbjct: 335 RISLFLEKIGIDMNRVRFRQHMSNEMAHYACD 366
>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 801
Score = 26.2 bits (55), Expect = 2.8
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +3
Query: 147 GRYHYWAACLTSEHCWLVPSVDS 215
G ++YW T E WL SVD+
Sbjct: 277 GDWNYWFTISTEEKTWLSQSVDA 299
>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 293
Score = 26.2 bits (55), Expect = 2.8
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = -3
Query: 336 AIDMATSTRITLSVRDIIVHVIT*---GRPKNIVAYFLPKMLKASPQKGLANSAPKLGKL 166
+ID+A+S IT+ I T +PKN V+ +PKM + L + + LG +
Sbjct: 225 SIDLASSNDITVIESTIAPQQATTHPPSQPKNAVSVPIPKMDSTDSKGELPSESLVLGTV 284
Query: 165 PSS 157
P +
Sbjct: 285 PDN 287
>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 377
Score = 25.8 bits (54), Expect = 3.7
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 173 ASCPVVISPTQTSACPKVLN 114
A+C V PT+ + CPK LN
Sbjct: 222 AACRFVHEPTRKTICPKFLN 241
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 25.0 bits (52), Expect = 6.5
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +2
Query: 269 VITWTIISLTDNVILVLVAMSIAGVGVAGQNVAI 370
+IT T+++ T VILV+ + + + G N +I
Sbjct: 301 MITPTVVTTTPMVILVMAVVMETTINIVGNNDSI 334
>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 517
Score = 25.0 bits (52), Expect = 6.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 50 LACQTGYICAWPSYTTSNFESNS 118
+A TGY A P Y ++F SNS
Sbjct: 305 MALNTGYSDADPGYLRTSFRSNS 327
>SPAC607.05 |rpn9||19S proteasome regulatory subunit
Rpn9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 381
Score = 25.0 bits (52), Expect = 6.5
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +2
Query: 110 SNSTLLDRPMSAWEISLLGSLPNFGALLASP 202
S++ L++R + ++LG + NFG LL P
Sbjct: 195 SHTELVERAVDLSVAAILGDIYNFGELLLHP 225
>SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 910
Score = 25.0 bits (52), Expect = 6.5
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +3
Query: 147 GRYHYWAACLTSE 185
GRY WA+CL SE
Sbjct: 480 GRYSKWASCLESE 492
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 24.6 bits (51), Expect = 8.5
Identities = 8/17 (47%), Positives = 14/17 (82%)
Frame = -3
Query: 57 HANNEMHSIASDCVISS 7
HAN+ +HS+A++ IS+
Sbjct: 296 HANSSVHSVATEATISN 312
>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 464
Score = 24.6 bits (51), Expect = 8.5
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3
Query: 108 SPIQHFWTGRCLRGRYHYW 164
+PI+H G+C+RGR + W
Sbjct: 307 APIEH--DGKCIRGRAYPW 323
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,220,070
Number of Sequences: 5004
Number of extensions: 47483
Number of successful extensions: 134
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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