Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23j05
         (593 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   3.0  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   3.0  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   3.0  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   6.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   6.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   6.9  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    21   9.1  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                21   9.1  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 411 LTSTFSNKSNLTLRSEAKQTIS 346
           L  ++SN+ NL  + EAK  +S
Sbjct: 670 LFGSWSNRPNLLFKDEAKDLVS 691


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 411 LTSTFSNKSNLTLRSEAKQTIS 346
           L  ++SN+ NL  + EAK  +S
Sbjct: 670 LFGSWSNRPNLLFKDEAKDLVS 691


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 411 LTSTFSNKSNLTLRSEAKQTIS 346
           L  ++SN+ NL  + EAK  +S
Sbjct: 670 LFGSWSNRPNLLFKDEAKDLVS 691


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/32 (25%), Positives = 17/32 (53%)
 Frame = +2

Query: 2   SFRVIAKLATPIIGNVICLSRAQLSTVRMTSN 97
           +FR++      +I N  C++  Q   ++ T+N
Sbjct: 397 NFRILGANVKELIRNTHCVNNNQNDNIQNTNN 428


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 283 RSPHSGFPL*SVCWSRAWQSRRDSL 357
           + P +G+P+  + W RA +   D L
Sbjct: 539 KCPVAGYPIEEIKWERANRELPDDL 563


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 283 RSPHSGFPL*SVCWSRAWQSRRDSL 357
           + P +G+P+  + W RA +   D L
Sbjct: 539 KCPVAGYPIEEIKWERANRELPDDL 563


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 286 TFALSVLFIELIQLFVIV 233
           TFA  +LFI L+Q+ V V
Sbjct: 83  TFASFLLFILLVQIAVAV 100


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 493 YQVHHKQGWSSS*TPRP 543
           Y+  +KQ WS + T RP
Sbjct: 285 YKTLYKQMWSQNITERP 301


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,036
Number of Sequences: 438
Number of extensions: 3337
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)