Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23j01
         (685 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    28   0.072
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    25   0.89 
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   3.6  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    22   4.7  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   4.7  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    22   6.3  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   6.3  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    21   8.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.3  

>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 28.3 bits (60), Expect = 0.072
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -1

Query: 301 HHSSSNTCPSTRPICSCCKRNVGS-HSICYHICLLQLEH 188
           H  + +T PS  PIC+ CKR   S +S+  H  +   +H
Sbjct: 21  HIQNVHTRPSKEPICNICKRVYSSLNSLRNHKSIYHRQH 59


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +1

Query: 205 DKYGNKYYENPRFFYSRNRWVEYSDKYYLNYDGSQVP 315
           + Y N  Y N    Y+ N +  Y   YY   +  Q+P
Sbjct: 327 NNYNNNNYNNNYNNYNNNNYNNYKKLYYNIINIEQIP 363


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 17/75 (22%), Positives = 26/75 (34%), Gaps = 4/75 (5%)
 Frame = -1

Query: 340 SVANQTIQREPDFHHSSSNTCPSTRPICSCCKRNVGSHSICYHICLLQLEHRPLHRPACI 161
           S+   +I  E     SS +  P     C   K    S +    +C+   +    HRP C 
Sbjct: 60  SIDRSSIHEESYLAESSRSIDPCASKYCGIGKECELSPNSTIAVCVCMRKCPRRHRPVCA 119

Query: 160 ----VYTTRLLYHRS 128
               +Y      HR+
Sbjct: 120 SNGKIYANHCELHRA 134


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -2

Query: 486 FRLPGFHFGSGRTVRHILGGRARKI 412
           + +P   +GS +  RH+L    RK+
Sbjct: 52  YLMPNIGYGSNKKTRHMLPTGFRKV 76


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/43 (23%), Positives = 18/43 (41%)
 Frame = +1

Query: 364 QDPSRPHYKWMADHTENLSGTTAQYVPYSTTRPKVEAWEPKRK 492
           +DP R  Y+W    +   S T   ++P +     +     KR+
Sbjct: 419 RDPERTPYQWDNSTSAGFSQTNKTWLPVNENYKSLNLAAQKRE 461


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -1

Query: 358 EANRFCSVANQTIQREPDFHHSSS 287
           E+ ++ + +N    R  DF H+SS
Sbjct: 206 ESKKYATSSNSLRNRTHDFQHTSS 229


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -1

Query: 358 EANRFCSVANQTIQREPDFHHSSS 287
           E+ ++ + +N    R  DF H+SS
Sbjct: 206 ESKKYATSSNSLRSRTHDFQHTSS 229


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 138 YKSLVV*TIQAGRCKGRCSSW 200
           Y   V   I +  C+GRCSS+
Sbjct: 40  YPGCVPKPIPSYACRGRCSSY 60


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -1

Query: 385 SGDDSDPDAEANRFCSVANQTIQREPDFHHSSSNTCPS 272
           + DD +P+ E     S   + I + P +  +S+  C S
Sbjct: 860 TNDDFNPNIEEEASDSAQGRAILKIPSYKPASTPGCSS 897


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,006
Number of Sequences: 438
Number of extensions: 5029
Number of successful extensions: 20
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)