Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23i16
         (501 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.11 |||N-oligosaccharyltransferase gamma subunit |Schi...    44   1e-05
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc...    30   0.22 
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    27   1.2  
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s...    26   3.7  
SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|c...    25   4.8  
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ...    25   6.4  

>SPAPB17E12.11 |||N-oligosaccharyltransferase gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 44.4 bits (100), Expect = 1e-05
 Identities = 24/102 (23%), Positives = 46/102 (45%)
 Frame = +3

Query: 192 LTDITAKKSVIPLNINKFKEYVKSPPRDYSFVVMFTAMAPARRCAICQHVNDEYLLVANS 371
           L   T    VI +    F   V    +D++ V +F+A +    C +C+ +  E+  +ANS
Sbjct: 23  LNSKTDADGVIQITGRLFHRIVNGK-QDFTTVALFSADSSTMNCDVCRLIEPEFKALANS 81

Query: 372 FRFSAAYNNKLFFGIVDFDEGSDIFQMLRLNTAPVIMHFPAK 497
           ++     ++ + F   DF +  ++FQ   + + P    F  K
Sbjct: 82  YKLKYGLDSGIRFTYADFGKNKNLFQDFSIESVPNFWIFKPK 123


>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 807

 Score = 29.9 bits (64), Expect = 0.22
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +3

Query: 285 VVMFTAMAPARRCAICQHVNDEYLLVANS-FRFSAAYNNKLFFGIVDFDE 431
           V+ + A A   RC++C  VND Y  ++ S  +  A+ +   F  +  F E
Sbjct: 89  VLRYPAQAMCFRCSLCMTVNDVYFCLSGSQIKTKASTDGSQFISVEHFVE 138


>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = +3

Query: 90  NMNFKVXXXXXXXXXYYEGAAQPRAKGIEEKVQQLTDITAKKSVIPLNINKFKE 251
           N N ++          Y    Q  +KG++    +LT+ TAK S +P NI    E
Sbjct: 389 NWNNRLLQPSSKEQAVYSFQTQKNSKGLQFTSNELTNPTAKYSQLPNNIANIGE 442


>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
           subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 821

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 9/37 (24%), Positives = 23/37 (62%), Gaps = 5/37 (13%)
 Frame = -2

Query: 269 WRRLH-----IFLKLIYV*WNYRLLCCNISQLLHFLL 174
           WRR++     +F  L Y  + +  + C++++++HF++
Sbjct: 629 WRRVNLGERNVFRNLDYTKFEWHFVSCHLAEMIHFVI 665


>SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 559

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 192 LTDITAKKSVIPLNINKFKEYVKSPPRDYSFVVMFTAMA 308
           L    A  S + +N+N F  YVK P   Y  +++   +A
Sbjct: 271 LNSSVAGFSTLAVNVNDFTRYVKHPKTPYVQMLILPLVA 309


>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 359

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +3

Query: 393 NNKLFFGIVDFDEGSDIFQMLRLNTAPVIMHFPAKG 500
           +N +  G +D D  SD+     +   P ++ FP  G
Sbjct: 71  HNDVLIGKIDADTHSDVADKYHITGFPTLIWFPPDG 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,931,124
Number of Sequences: 5004
Number of extensions: 36512
Number of successful extensions: 101
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)