Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23i12
         (645 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    24   1.4  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   4.4  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   4.4  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   5.8  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   5.8  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   7.7  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -2

Query: 383 IIKENKLIKFYSCGPTSKLKLL*NVYIFFLEK 288
           +IK  K++K Y+C P     ++  VY F + +
Sbjct: 221 VIKATKVLKMYACCPNDTYPMI--VYEFSISR 250


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -1

Query: 300 FFRKSRHTYIHTI 262
           +F   +H+Y+HTI
Sbjct: 123 YFYNGKHSYVHTI 135


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 558 LIITIKLRRTVCRLFKIFTQPSTIN 484
           +++T+ +  TVC L   F  PST N
Sbjct: 321 ILVTLSIWITVCVLNVHFRSPSTHN 345


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -2

Query: 314 NVYIFFLEKVDIHTYILF 261
           N  I+F+E + ++TY  F
Sbjct: 218 NKLIYFIEDIGLNTYYFF 235


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -1

Query: 300 FFRKSRHTYIHTI 262
           +F   +H+Y+HTI
Sbjct: 91  YFYNGKHSYLHTI 103


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -3

Query: 607 QSITLNHSINLDFNTRINYNN 545
           ++I  N++   ++N + NYNN
Sbjct: 88  KTIHNNNNYKYNYNNKYNYNN 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,738
Number of Sequences: 438
Number of extensions: 3549
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)