Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23i08
         (633 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          23   2.5  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   3.3  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          23   3.3  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          23   3.3  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          23   3.3  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          23   3.3  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    23   3.3  

>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 14/38 (36%), Positives = 16/38 (42%)
 Frame = -1

Query: 624 STRSRGRLIAPTAPATSRR*GSKGRCARSSTRAGEREC 511
           S RSR R    T+   SR   S+     S    GER C
Sbjct: 216 SLRSRSRSFQRTSSCHSRYEDSRHEDGNSYRNDGERSC 253


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 20/62 (32%), Positives = 24/62 (38%), Gaps = 6/62 (9%)
 Frame = +3

Query: 246 GRCYKPV--NMYYTSVNSQRRLQKELMSLMKEPPPGVTVD----GDQASQNLTLWTVHME 407
           G    PV  N+YY S +S+        SLMK    G  V      D     LT+  V   
Sbjct: 254 GMALSPVTHNLYYNSPSSENLYYVNTESLMKSENQGNDVQYERVQDVFDSQLTVKAVSKN 313

Query: 408 GV 413
           GV
Sbjct: 314 GV 315


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 14/38 (36%), Positives = 16/38 (42%)
 Frame = -1

Query: 624 STRSRGRLIAPTAPATSRR*GSKGRCARSSTRAGEREC 511
           S RSR R    T+   SR   S+     S    GER C
Sbjct: 216 SLRSRSRSFQRTSSCHSRYEDSRHEDRNSYRNDGERSC 253


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 14/38 (36%), Positives = 16/38 (42%)
 Frame = -1

Query: 624 STRSRGRLIAPTAPATSRR*GSKGRCARSSTRAGEREC 511
           S RSR R    T+   SR   S+     S    GER C
Sbjct: 216 SLRSRSRSFQRTSSCHSRYEDSRHEDRNSYRNDGERSC 253


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 14/38 (36%), Positives = 16/38 (42%)
 Frame = -1

Query: 624 STRSRGRLIAPTAPATSRR*GSKGRCARSSTRAGEREC 511
           S RSR R    T+   SR   S+     S    GER C
Sbjct: 216 SLRSRSRSFQRTSSCHSRYEDSRHEDRNSYRNDGERSC 253


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 14/38 (36%), Positives = 16/38 (42%)
 Frame = -1

Query: 624 STRSRGRLIAPTAPATSRR*GSKGRCARSSTRAGEREC 511
           S RSR R    T+   SR   S+     S    GER C
Sbjct: 216 SLRSRSRSFQRTSSCHSRYEDSRHEDRNSYRNDGERSC 253


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 14/38 (36%), Positives = 16/38 (42%)
 Frame = -1

Query: 624 STRSRGRLIAPTAPATSRR*GSKGRCARSSTRAGEREC 511
           S RSR R    T+   SR   S+     S    GER C
Sbjct: 216 SLRSRSRSFQRTSSCHSRYEDSRHEDRNSYRNDGERSC 253


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,760
Number of Sequences: 438
Number of extensions: 4212
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)