Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt23i05
(636 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub... 286 2e-78
SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces ... 31 0.14
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 29 0.43
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 0.43
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce... 28 1.3
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S... 28 1.3
SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces pomb... 27 1.7
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr... 27 1.7
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po... 27 2.3
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 3.0
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po... 27 3.0
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom... 26 4.0
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 26 4.0
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz... 26 4.0
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 26 5.2
SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces p... 26 5.2
SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc... 25 6.9
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 25 6.9
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 25 6.9
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 25 6.9
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 25 9.1
SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomy... 25 9.1
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 25 9.1
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 25 9.1
>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 286 bits (701), Expect = 2e-78
Identities = 126/209 (60%), Positives = 158/209 (75%)
Frame = +1
Query: 10 PATSATLTSEDALKLYEQLTILRRIETASGNLYKEKIIRGFCHLYSGQEAVAVGMRAAMR 189
P+T +T + L LYE++ +RR+E A LYK K IRGFCHL GQEAVA G+ A+
Sbjct: 67 PSTEIEVTKGELLGLYEKMVTIRRLELACDALYKAKKIRGFCHLSIGQEAVAAGIEGAIT 126
Query: 190 DADSVITAYRCHGWTYLMGVSVLGVLSELTGRRTGCSRGKGGSMHLYGRNFYGGNGIVGA 369
DS+IT+YRCHG+ Y G+S+ ++ EL GR+ G S+GKGGSMH++ +NFYGGNGIVGA
Sbjct: 127 LDDSIITSYRCHGFAYTRGLSIRSIIGELMGRQCGASKGKGGSMHIFAKNFYGGNGIVGA 186
Query: 370 QVPLGAGVAFAHKYRADGGVTFALYGDGAANQGQLFEAYNMSKLWDLPCVFVCENNGYGM 549
Q+PLGAG+ FA KY TFALYGDGA+NQGQ FEA+NM+KLW LP +F CENN YGM
Sbjct: 187 QIPLGAGIGFAQKYLEKPTTTFALYGDGASNQGQAFEAFNMAKLWGLPVIFACENNKYGM 246
Query: 550 GTSVDRSSASTEYYTRGDYVPGVWVDGMD 636
GTS +RSSA TE+Y RG Y+PG+ V+GMD
Sbjct: 247 GTSAERSSAMTEFYKRGQYIPGLLVNGMD 275
>SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 245
Score = 31.1 bits (67), Expect = 0.14
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Frame = +2
Query: 395 PSPTSTAPTAESRSLCTETEPPTR-VNSSKPTT--CLNYGTCLASS 523
P+PT T+P S S ++T+ TR NS PTT +Y T +++S
Sbjct: 166 PNPTQTSPGKPSTSESSQTDTSTRPANSQTPTTTRASSYTTLVSTS 211
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 29.5 bits (63), Expect = 0.43
Identities = 21/63 (33%), Positives = 26/63 (41%)
Frame = -2
Query: 467 PWLAAPSPYRANVTPPSARYLWAKATPAPNGTCAPTIPLPP*KLRPYKCMEPPLPREQPV 288
P A P P +P SA + +KA P P+ P P P K P P LP P
Sbjct: 140 PTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPP---SAPSLPSAVPP 196
Query: 287 LRP 279
+ P
Sbjct: 197 MPP 199
Score = 26.6 bits (56), Expect = 3.0
Identities = 25/76 (32%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
Frame = -2
Query: 467 PWLAAPSPYRANVTPPSARYLWAKATPAPNGTCAPTIPLPP*KLRPYKCMEPPLPREQ-P 291
P A P P +A PP L A PA P+ P P + P PP P Q P
Sbjct: 154 PASAPPIPSKA---PPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPLSQAP 210
Query: 290 VLRPVSSESTPSTLTP 243
V ++ S PS+ P
Sbjct: 211 V---ANTSSRPSSFAP 223
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.5 bits (63), Expect = 0.43
Identities = 23/78 (29%), Positives = 33/78 (42%)
Frame = -2
Query: 389 PAPNGTCAPTIPLPP*KLRPYKCMEPPLPREQPVLRPVSSESTPSTLTPMR*VHP*QRYA 210
P P + AP +P P L P + P + PV P S PS TP V A
Sbjct: 1209 PVPPPSTAPPVPTPSAGLPP---VPVPTAKAPPV--PAPSSEAPSVSTPRSSVPSPHSNA 1263
Query: 209 VITESASRIAALIPTATA 156
+ ++S +A+ P T+
Sbjct: 1264 SPSPTSSSMASAAPARTS 1281
Score = 25.0 bits (52), Expect = 9.1
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +2
Query: 395 PSPTSTAPTAESRSLCTETEPPTRVNSSK 481
P PTST P +S S PP SS+
Sbjct: 1044 PIPTSTPPVPKSSSGAPSAPPPVPAPSSE 1072
>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 413
Score = 27.9 bits (59), Expect = 1.3
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = -1
Query: 321 HGTSLAPGATGPAPRQLRE--HPQHTNAHEISPS 226
H S AP ++ P L HP HTNA +++ S
Sbjct: 83 HSNSAAPASSSPTSATLSTAAHPVHTNAAQVAGS 116
>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
Vma6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 27.9 bits (59), Expect = 1.3
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -1
Query: 438 SERDSAVGAVLVGEGHSSSQRDLRTNNPVATI 343
S+ +S VL HS+SQ DLR + V+T+
Sbjct: 402 SQNESIESNVLFPGNHSNSQTDLRNGDAVSTV 433
>SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 376
Score = 27.5 bits (58), Expect = 1.7
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = -2
Query: 128 PRMIFSLYRFPDAVSILRNIV 66
PR++F + PDAV IL+N++
Sbjct: 332 PRIVFHIQITPDAVEILKNVL 352
>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 593
Score = 27.5 bits (58), Expect = 1.7
Identities = 10/35 (28%), Positives = 15/35 (42%)
Frame = +2
Query: 410 TAPTAESRSLCTETEPPTRVNSSKPTTCLNYGTCL 514
+ P + LC E P R+ T C+ G C+
Sbjct: 28 SCPVVRTGKLCIEVNPTDRIAFISETLCIGCGICV 62
>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 27.1 bits (57), Expect = 2.3
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = +1
Query: 535 NGYGMGTSVDRSSASTEYYTRGDYVPGV 618
NG+ GT + + A EYY++ D + +
Sbjct: 82 NGFVNGTQISSTPAEREYYSKSDEIKNI 109
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 3.0
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = +2
Query: 404 TSTAPTAESRSLCTETEPPTRVNSSKPTTCLNYGT 508
TS PT S + T T PPT +SS P T N T
Sbjct: 397 TSIPPTGNSTTPVTPTVPPT--SSSTPLTTTNCTT 429
>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 949
Score = 26.6 bits (56), Expect = 3.0
Identities = 27/98 (27%), Positives = 42/98 (42%)
Frame = -2
Query: 320 MEPPLPREQPVLRPVSSESTPSTLTPMR*VHP*QRYAVITESASRIAALIPTATASCPEY 141
+E P+ +PV P +E TP TL+P+ + + E + A AS Y
Sbjct: 41 LEDPVNPIRPVYTPTRTEITPVTLSPIPITPVREFQPYLHEISQEYARYSKQKRASLRRY 100
Query: 140 R*QKPRMIFSLYRFPDAVSILRNIVSCSYSLRASSEVS 27
+ ++ S+ S+LR S S LR +SE S
Sbjct: 101 LEKHGKLEGSMKESSINGSLLRR-SSVSTILRPASESS 137
>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 26.2 bits (55), Expect = 4.0
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = -2
Query: 413 RYLWAKAT--PAPNGTCAPTIPLPP*KLRPYKCMEPPLPREQPVLRPVSSEST 261
R LW ++T APN +P P K + ++P P +P L + S +T
Sbjct: 574 RKLWPQSTLIQAPNSDDEENVPSPSPKKKVVSPIKPLSPSRRPPLTSLYSGTT 626
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 26.2 bits (55), Expect = 4.0
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +1
Query: 457 ANQGQLFEAYNMSKLWDLPCVFVCENNGYGMGTSVDRS 570
+N G+L + +S + D+ V C N + S DR+
Sbjct: 475 SNNGELIGEFTLSNITDVEKVCACSNKNIQISFSSDRT 512
>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 26.2 bits (55), Expect = 4.0
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Frame = -1
Query: 462 VGGSVSVQSERDSAVGAVLVGEGHSSS--QRDLRTNNPVATIEVASVQMHGTSLAPGATG 289
+ G VSV S SA A + +GHS++ Q+ ++ P++ V M S++P
Sbjct: 270 IDGFVSVASHFSSASTAESLDDGHSATTIQQGDVSSYPLSRSVSTPVPMSPISISPAKPS 329
Query: 288 PAPRQLRE 265
P +L +
Sbjct: 330 PQSPKLSQ 337
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 25.8 bits (54), Expect = 5.2
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 398 SPTSTAPTAESRSLCTETEPPTRVNSSKPT 487
+PTS P + + TE+ PP ++SS T
Sbjct: 401 APTSNVPAYSTPARPTESPPPPPISSSSTT 430
>SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 411
Score = 25.8 bits (54), Expect = 5.2
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 578 LADERSTLVPMPYPLFSQTKTQGKSHSLDM 489
L + ST++ YPL T Q SHSL +
Sbjct: 9 LLESFSTVILSIYPLAKSTNQQSHSHSLSL 38
>SPAC11E3.06 |map1||MADS-box transcription factor
Map1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 398
Score = 25.4 bits (53), Expect = 6.9
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Frame = -2
Query: 305 PREQPVLRPVSSESTPSTL-TPMR*VHP*QR----YAVITESASRIAALIPTATASCPEY 141
PR++P L P+S + PST+ T R Q+ YA I E S + A++S P+
Sbjct: 312 PRDRPPLIPISRIAVPSTIETEERQYRGNQKIINFYAKIFEPNSGLGTSSEGASSSFPDV 371
Query: 140 R*QKPRMIFSLYRFPD 93
+ Y PD
Sbjct: 372 DPNLAQNGVPYYSLPD 387
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.4 bits (53), Expect = 6.9
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = -2
Query: 389 PAPNGTCAPTIPLPP*KLRPYKCMEPPLPREQP 291
P P A +IPLPP + PP PR P
Sbjct: 341 PPPRSNAAGSIPLPP---QGRSAPPPPPPRSAP 370
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 25.4 bits (53), Expect = 6.9
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -3
Query: 130 NHG*SFLYIGFLMRFQSSAISSVVHTA*EHLQ 35
N+G S L I LM + + +V+HTA +H+Q
Sbjct: 147 NYGLSILSIHALMCVECECLLNVIHTA-QHMQ 177
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1919
Score = 25.4 bits (53), Expect = 6.9
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -3
Query: 130 NHG*SFLYIGFLMRFQSSAISSVVHTA*EHLQ 35
N+G S L I LM + + +V+HTA +H+Q
Sbjct: 147 NYGLSILSIHALMCVECECLLNVIHTA-QHMQ 177
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 25.0 bits (52), Expect = 9.1
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = -2
Query: 455 APSP-YRANVTPPSARYLWAKATPAPNGTCAPTIPLPP 345
+PSP + AN P+A + AP APT P PP
Sbjct: 331 SPSPAFTANRFSPAAPTTVSSERNAPPYPSAPTRPTPP 368
>SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 581
Score = 25.0 bits (52), Expect = 9.1
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = +2
Query: 335 ATSMVATGLLVRRSRWELEWPSPTSTAPTAESRSLCTETEPPTRVNSSKPTTCLNYGTCL 514
A + ++TGLL +R +W L W T P +E T + T++ P + L+ T L
Sbjct: 127 AVTSLSTGLLSKREKWSL-WEG-NLTNPRSEQPH--TPCKKGTKIKLKPPQSPLSPTTSL 182
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 25.0 bits (52), Expect = 9.1
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Frame = +2
Query: 404 TSTAPTAESRSLCTETEPP-TRVNSS----KPTTCLNYGT 508
T+T P S + T T PP T VNS+ PTT +N T
Sbjct: 93 TTTVPPTTSLNTTTTTAPPTTHVNSTTTVVPPTTHVNTTT 132
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 25.0 bits (52), Expect = 9.1
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = +2
Query: 290 PVAPGAREVPCICTDATSMVATGLLVRRSRW-ELEWPSPTSTAPTAESRSLCTETEPPTR 466
P AP + P A + +T ++++ P+P++ A S S ++ P
Sbjct: 1026 PPAPAMQARPNTTQAAAPVTSTTTTIKQATTVSASKPAPSTVTSAASSPSNISKPSAPVA 1085
Query: 467 VNSSKPT 487
N SKP+
Sbjct: 1086 NNVSKPS 1092
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,465,764
Number of Sequences: 5004
Number of extensions: 50906
Number of successful extensions: 220
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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