Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23h22
         (540 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo...    25   5.4  
SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr 3...    25   7.2  
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    25   9.5  

>SPBC215.01 ||SPBC3B9.20|GTPase activating
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = +1

Query: 373 LVHL*HRPLXIRYSNILEKYITGYEKKNFFGKKLTKNVIKSV 498
           L+H            I E YI GY  K  +G  + + V +S+
Sbjct: 316 LIHCTEEQTFFLMHKICEDYIPGYYSKTMYGTLIDQQVYESL 357


>SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 334

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = +2

Query: 41  NKNGLESDYCFMHHASSSFGCPSTCHRWCRRLGRLEQWRSQPLDTSM 181
           N+  L   +CF H+  +S+G  ++  R+       + W   P+D S+
Sbjct: 195 NREALICSHCFHHNGLASYGEKASDVRYVCLF--CKAWNGPPIDKSL 239


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +1

Query: 409 YSNILEKYITGYEKKNFFGKKLTKNVIKSVSLPLCXL 519
           + N+    I GY+ ++ FG       +KS+ L  C L
Sbjct: 185 FKNLSSLEIRGYDIRSIFGWDFLSTTLKSLILHHCDL 221


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,979,437
Number of Sequences: 5004
Number of extensions: 37502
Number of successful extensions: 102
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)