Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt23h09
(566 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyc... 54 1e-08
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa... 28 0.83
SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch... 26 4.4
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce... 26 4.4
SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||... 25 5.9
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 25 7.7
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 25 7.7
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 25 7.7
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy... 25 7.7
>SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 389
Score = 54.0 bits (124), Expect = 1e-08
Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 15/149 (10%)
Frame = +3
Query: 162 ELTNFENSGISLLETSHRSSTYMKLNVEIQDVVRNLLDVPDNYKVXXXXXXXXXXXXXVP 341
+ NF+ G+ + E SHRS + + R L ++P+N+ +
Sbjct: 28 DFVNFQGLGMGVAEISHRSKQGSGIVTSAESNFRKLYNIPENFHILFMQGGGTEQFAACL 87
Query: 342 LNLI---------SRTGTADYVVTGAWSXXXXXXXXXYG-KVNLVLPPTD---KYEDIPD 482
N+ +++ A+Y++TGAWS G ++ + + KY +P+
Sbjct: 88 YNVYAHHALKNGNAKSLVANYIITGAWSKKAYAEAERLGFPCHVAVDMKELAGKYGSLPE 147
Query: 483 --QTKWNLDPNASYVHICTNETIHGVEFD 563
K+ D S V+ C NET+HGVEF+
Sbjct: 148 DKDLKFTPDGETSLVYYCDNETVHGVEFN 176
>SPAC3C7.06c |pit1||serine/threonine protein kinase
Pit1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 650
Score = 28.3 bits (60), Expect = 0.83
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -3
Query: 507 WDQGSILSDQVCLHIYLSVVAPNLLSHIFSPPW 409
WD+ +L+++ L I L +AP +FSPPW
Sbjct: 275 WDRAELLANK--LGISLPKMAPLDFGDLFSPPW 305
>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 679
Score = 25.8 bits (54), Expect = 4.4
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +3
Query: 168 TNFENSGISLLETSHRSSTYMKLNVEIQDVVRNLLDVPDNY 290
T ++ SG+ L T HR KLN + ++ +LD+ + +
Sbjct: 215 TMYKKSGLKTLVTLHRDLGIDKLNQDEVTIITAVLDLREKH 255
>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 25.8 bits (54), Expect = 4.4
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -3
Query: 351 LSLKEQLQIDQDPHQLKTALCSCPVHLISFAQ 256
L+LK+ + I + H L A+CS ISF Q
Sbjct: 352 LTLKDNICIIDEAHNLIDAICSMHSSSISFRQ 383
>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 565
Score = 25.4 bits (53), Expect = 5.9
Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 6/60 (10%)
Frame = -3
Query: 366 YQFWILSLKEQLQIDQDPHQLKTALCSCPVHLISFAQHP------EFRHLASCMLKNDDL 205
YQFWI L + ++ + L P L SF P F +L C+ KN +
Sbjct: 168 YQFWIERLLHGITEKEELQHIYKILTLTPASLDSFQNRPPYIGITTFPNLQHCIKKNQPI 227
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 25.0 bits (52), Expect = 7.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 189 ISLLETSHRSSTYMKLNVEIQDVVRNLL 272
+SLL S S++Y L + D+V N+L
Sbjct: 1208 LSLLSDSLNSTSYRLLGISCSDMVSNIL 1235
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 25.0 bits (52), Expect = 7.7
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +3
Query: 162 ELTNFENSGISLLETSHRSSTYMKLNVEIQDVVRNLLDVPDNYKV 296
EL E S LLE + R S + ++ +++L DVP K+
Sbjct: 2674 ELAKHEGSSELLLECAWRISDWSNNRESLEVAIKSLSDVPTPRKL 2718
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 25.0 bits (52), Expect = 7.7
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 159 DELTNFENSGISLLETSHRSSTYMKLNVEIQDVVR 263
D LTN + +SLL S+R ST ++E ++
Sbjct: 679 DFLTNLNATTLSLLTQSNRPSTLFSSDIEYTPTIQ 713
>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 435
Score = 25.0 bits (52), Expect = 7.7
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = -3
Query: 321 QDPHQLKTALCS-CPVHLISFAQHPEFRHLASCMLKNDDLFPIN*FQNFQ 175
+DP Q K A+C C SF Q L+ C L+ D + + N+Q
Sbjct: 277 RDPGQ-KLAICQKCDFAFCSFCQATWHGDLSPCKLEGDSKKLVEMYLNYQ 325
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,207,431
Number of Sequences: 5004
Number of extensions: 42984
Number of successful extensions: 123
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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