Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23h07
         (590 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase Uch1|Schizosa...    73   2e-14
SPBC409.06 |uch2||ubiquitin C-terminal hydrolase Uch2|Schizosacc...    49   4e-07
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc...    29   0.38 
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb...    28   1.2  
SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch...    26   4.7  
SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb...    25   8.3  
SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces pomb...    25   8.3  

>SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase
           Uch1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 222

 Score = 73.3 bits (172), Expect = 2e-14
 Identities = 46/141 (32%), Positives = 79/141 (56%), Gaps = 1/141 (0%)
 Frame = +1

Query: 166 PLESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKK 345
           PLE+ P+VL  +LQK+GV +  ++ D+  L+ E   ++PRPV +++ +FP S     +K 
Sbjct: 4   PLENTPEVLEPYLQKIGVQDA-SVFDLFSLE-EIPEYIPRPVHALLFVFPSSGTKTIYKG 61

Query: 346 TEENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANNTDIIELSDG-HMQKFLNEAK 522
           +    IL K    S  + +  Q I NACGTI L+H+V+N     ++++   ++  +  A+
Sbjct: 62  SR---ILPKD---SDKVLWYPQTIPNACGTIGLLHAVSNGELRRKVNENDFIKSLIRTAE 115

Query: 523 GLDATARGKLLEKSEGIINAH 585
           G     R KL+E S+ +   H
Sbjct: 116 GSSIEERAKLIEDSKELEALH 136


>SPBC409.06 |uch2||ubiquitin C-terminal hydrolase
           Uch2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 300

 Score = 49.2 bits (112), Expect = 4e-07
 Identities = 38/139 (27%), Positives = 69/139 (49%)
 Frame = +1

Query: 169 LESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKKT 348
           +ES+  V    ++ LGV +   + ++  LD ++L   P  +  ++ LF  +   +    T
Sbjct: 6   IESDAGVFTDLIENLGVKDV-EVDELYSLDVDSLRQFP-DIYGIIFLFKWNSKVDKPDGT 63

Query: 349 EENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANNTDIIELSDGHMQKFLNEAKGL 528
            + + +        NIF+ KQ I+NAC T AL+  + N++D I+L    + +F + +K L
Sbjct: 64  MDYDSMD-------NIFFAKQVINNACATQALLSVLLNHSDEIDLGT-TLSEFKDFSKTL 115

Query: 529 DATARGKLLEKSEGIINAH 585
               +G+ L  SE I   H
Sbjct: 116 PPELKGEALGNSEHIRCCH 134


>SPAC1F8.03c |str3||siderophore-iron transporter Str3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 29.5 bits (63), Expect = 0.38
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 90  QLDKSNYIFKIVERQTSNKNEFAISKWEKI 1
           Q +K   I KI+  QT  KN+   SKW+K+
Sbjct: 265 QANKDENIKKIINYQTEEKNKNKQSKWQKL 294


>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = -3

Query: 252 SHDIYNIPFVWYAELLQKLVQDIGIGFKRD*SFGRHFSHSNCGVDEGD 109
           +H   +  F W  E L + + DIG+    D S+G H   S    D GD
Sbjct: 133 AHSKIDKEFGWLLEDLDQEIDDIGVPGTEDPSYG-HSEDSEVSDDTGD 179


>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
           oxidase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 8/55 (14%)
 Frame = +1

Query: 139 TEMATETLVPLESNPDVLNKFLQ-------KLGVPNKWNI-VDVMGLDPETLSWV 279
           ++  +E  +PLES PD L K +        K+G    W I V V    PE   W+
Sbjct: 318 SQHVSEWGIPLESAPDALEKLINYTVDDAGKIGAYTHWPIEVRVCAPTPEDECWL 372


>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 519

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +3

Query: 384 FWKYFLYETKYQQCMWDYSS 443
           FW YF +      C WD S+
Sbjct: 237 FWAYFTFIASVLVCFWDESN 256


>SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 298

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/18 (61%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
 Frame = +1

Query: 181 PDVLNKFLQKL-GVPNKW 231
           PDV NKFL+K+   P KW
Sbjct: 207 PDVANKFLEKVKTAPLKW 224


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,432,243
Number of Sequences: 5004
Number of extensions: 49965
Number of successful extensions: 174
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)