Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23h06
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch...    29   0.34 
SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr 1||...    27   2.4  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    26   3.2  
SPBC409.08 |||spermine family transporter |Schizosaccharomyces p...    26   4.2  
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi...    25   7.3  
SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    25   7.3  
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    25   9.7  
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    25   9.7  
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    25   9.7  

>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 684

 Score = 29.5 bits (63), Expect = 0.34
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = +3

Query: 258 DGLLCWNPTPSHTVAVQKCFKEFFGIKYDETQNASR-LCLDGVWQNYTDYSNCTERI 425
           D    WN   S++  V +C K FF  +Y +     R   L   + N+ D   CTE +
Sbjct: 186 DNKTTWNFQASYSPMVSECLKLFFRYQYSQFLFVYRESFLSDYYYNFHDGFYCTEHL 242


>SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 224

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
 Frame = -2

Query: 259 SKYAGQ*YSVRLAFLAKHSVLAVAFSITLSALSKVCKSSSLPLKMYYQLRIAAKSALVCS 80
           S YAG  Y  RLA +  HS      S   SALS+V K   +P+ + Y        +++ S
Sbjct: 122 SLYAGLTYPKRLAGIMGHSGFLPLASKFPSALSRVAK--EIPILLTYMTEDPIVPSVLSS 179

Query: 79  LAS--LINTQSL 50
            ++  LIN   L
Sbjct: 180 ASAKYLINNLQL 191


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 267 LCWNPTPSHTVAVQKCFKEFFGIKYDETQNASRLCL 374
           LC++  P+   A+ KC K F  +K  E+ N   L L
Sbjct: 294 LCYSEKPNGINAIMKCMKNFANLKV-ESMNVFDLWL 328


>SPBC409.08 |||spermine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 539

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
 Frame = -2

Query: 367 RREAFCVSSYFIPKNSLKHFWTA---TVWLGVGF 275
           R    C++S FIP   L   WT+    +W+G  F
Sbjct: 410 RLVGMCIASPFIPTGLLIFAWTSFPRLIWIGPAF 443


>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
           Gut2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 649

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 204 RSLQSHFR*RFLRFLKSVSPPVCR 133
           R   SHF  +F  F KS++PP  R
Sbjct: 32  RPAPSHFNPQFTPFTKSLAPPPSR 55


>SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 359

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 13/45 (28%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = -1

Query: 422 PLRAIRVVGVVLPNT-VQTQTRSVLCFIVFYSKKFFKAFLDGDRV 291
           PL+  +  G + P++ +  QT++++  ++F+  K  KAFL  D +
Sbjct: 238 PLKNPQERGRISPSSPLNDQTKALMQRLLFFRHKLQKAFLSPDHL 282


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +3

Query: 126 IFNGKLEDLQTLESAESVIENATARTECLARNANLTE 236
           I  GKL    T +S +  IE A+       RN+++ E
Sbjct: 853 IMKGKLPSSSTSQSNKPFIEKASMHAPAKGRNSSMQE 889


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = -2

Query: 382 TPSRHRREAFCVSSYF-IPKNSLK 314
           T  R  + AFCVS+Y   P NSL+
Sbjct: 592 TNCREEQGAFCVSTYISTPDNSLR 615


>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +3

Query: 207 CLARNANLTEYYCPAYFDGLLCWNPTPSHTVAVQK 311
           C     NL E+Y   + D  L WN       AVQ+
Sbjct: 181 CSLCEDNLPEWYFEVHSDFCLVWNDLVRRVFAVQQ 215


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,221,990
Number of Sequences: 5004
Number of extensions: 43884
Number of successful extensions: 138
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)