Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23h06
         (548 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   2.7  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   3.6  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   4.7  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   4.7  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
 Frame = +3

Query: 159 LESAESVIENATARTECLARNANLTEYYCPAYFDGLLCWNPTPSHTVAVQK--CFKE 323
           L   E+ ++   A  E   +   +    C +YF  LL  NP    T+ + +  CF +
Sbjct: 29  LLQTEAFVDVTLACNEASLKAHKVVLSACSSYFQKLLLSNPCKHPTIIMPQDVCFND 85


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +3

Query: 177 VIENATARTECLARNANLTEYYCPAYFDGLLCWNPTPSHTVAVQKCFKEF 326
           ++ N T   + LA  A   E Y P+  +  L WN  P ++  V+  ++ F
Sbjct: 2   LLHNKTLAGKALAFIAE--EGYVPSMREKFLGWNVPPEYSDLVRPHWRAF 49


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +1

Query: 238 TTARHILMDCC 270
           T  RH++M CC
Sbjct: 2   TKGRHVVMSCC 12


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = +3

Query: 177 VIENATARTECLARNANLTEYYCPAYFDGLLCWNPTPSHTVAVQKCFKEF 326
           ++ N T   + LA  A   E Y P+  +  L WN  P ++  V   ++ F
Sbjct: 2   LLHNKTLAGKALAFIAE--EGYVPSMREKFLGWNVPPEYSDLVHPHWRAF 49


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,192
Number of Sequences: 438
Number of extensions: 2957
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)