Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23h01
         (709 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.05c |||carbonic anhydrase |Schizosaccharomyces pombe|chr...    55   1e-08
SPCC1919.02 |||pig-X|Schizosaccharomyces pombe|chr 3|||Manual          27   2.6  
SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|ch...    26   6.1  

>SPBP8B7.05c |||carbonic anhydrase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 54.8 bits (126), Expect = 1e-08
 Identities = 29/83 (34%), Positives = 43/83 (51%)
 Frame = +2

Query: 170 FQEVKDNPTPKAVFYTCMDSRMIPTRFTETSVGDMFVVRNAGNVIPHSQHFVDEMTSCEP 349
           F   KD  TP+ ++  C DSR+  T       G++FV RN  NV+P S   ++ +     
Sbjct: 63  FTATKDIQTPQVLWIGCSDSRVPETTILNLLPGEVFVHRNIANVVPRSD--INAL----- 115

Query: 350 AALELGCIINNIRHIIVCGHSDC 418
           A +E    +  ++HIIVCGH  C
Sbjct: 116 AVMEYSVTVLKVKHIIVCGHYGC 138


>SPCC1919.02 |||pig-X|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 125 IMRYRVLDRASMVKQFQEVKDN 190
           I+R   +D  S+ KQF+E+K+N
Sbjct: 33  ILRNNTIDSLSIAKQFREIKNN 54


>SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 356 LELGCIINNIRHIIVCGHSDCKAMNLLYQL 445
           L   CI +NIRHI    H++ +A  +  +L
Sbjct: 116 LTRACITHNIRHICTAHHANDQAETIFMRL 145


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,932,673
Number of Sequences: 5004
Number of extensions: 60391
Number of successful extensions: 164
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)