Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23h01
         (709 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   3.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   3.7  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   5.0  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    22   6.6  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 305 PHSQHFVDEMTSCEPAALELG 367
           PH QH      S  PAA+++G
Sbjct: 440 PHHQHSTPLAHSSYPAAIQIG 460


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 551 HSFQGIFSNLSQHEYTTKTSMA 486
           HS++G    +S+HE  ++TS A
Sbjct: 705 HSWEGDSFKVSKHEEVSRTSTA 726


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 119 LKSSPYSFLVTTIYYYCSMLEF 54
           +K+S   FL  TI+ + +M+EF
Sbjct: 291 IKASEIWFLGCTIFLFAAMVEF 312


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 470 LYRRLLHF*ADREGSLLCSHYGR 402
           +YRRL+H   + E  LL SH  R
Sbjct: 241 VYRRLVHAVNEIEKRLLFSHNDR 263


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,133
Number of Sequences: 438
Number of extensions: 3909
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)