Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23g24
         (534 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    24   0.85 
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   6.0  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   6.0  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 24.2 bits (50), Expect = 0.85
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +3

Query: 171 ICWSQLVSREKLRSTFSSDLHLQLTMHRTC 260
           +C    V   K+   F+   H+  TM+ TC
Sbjct: 829 VCTVYAVLTRKIPEAFNESKHIGFTMYTTC 858



 Score = 22.6 bits (46), Expect = 2.6
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 269  NCGTCSVHRQLEVKVRRKGTP 207
            +C T S + +LEVK ++ G P
Sbjct: 964  DCSTQSEYYELEVKDQKNGKP 984


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 341 LFRTILFLPRHRSI*HR 291
           +FRT+  L  H+SI HR
Sbjct: 410 VFRTLNSLNNHKSIYHR 426


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 506 PKLRVITHPAPNTRPIV 456
           PKL+ I  P PNT  ++
Sbjct: 582 PKLKGIPDPXPNTCKVI 598


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,246
Number of Sequences: 438
Number of extensions: 3911
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15090993
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)