Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23g18
         (568 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    27   0.13 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   2.8  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   4.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   4.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   4.9  
AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.           21   6.5  
AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.           21   6.5  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   6.5  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 27.1 bits (57), Expect = 0.13
 Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
 Frame = +1

Query: 472 GGVRSGAP--GGRHQGHDPRPAARHEQPTKVLNC 567
           GG RS +P  G  H GH P P      P    +C
Sbjct: 108 GGYRSASPSPGMGHMGHTPTPNGHPSTPIVYASC 141


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +1

Query: 19  THRPPYHAHS*SLWSTQSTHNRYP 90
           T  PP+H H     S Q  H R P
Sbjct: 346 TMGPPHHHHHHQTQSLQHLHYRQP 369


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 12/50 (24%), Positives = 23/50 (46%)
 Frame = +2

Query: 212 VSFDASGAQATVRLALLATKSGGVAVLVGMGAPEQTVPLAGALSREVDIR 361
           +S +    QAT+ +  +   + G + +V   +  QTV     L R + I+
Sbjct: 32  LSREVISRQATINIGTIGHVAHGKSTIVKAISGVQTVRFKNELERNITIK 81


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -3

Query: 230  HSHRTTRRGVPPVSHESSSPAQPRSS 153
            H   +T   + P+S + S P + RSS
Sbjct: 1820 HGTSSTSSDISPMSEQKSLPRRGRSS 1845


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -1

Query: 547 VVRVSRLDVDHDLDAGPLARHFVRLQALLDAEVVRDQRLHVYFPTRY 407
           ++ +  L  DH+ +   +AR+       L AEV   QRL V+ P R+
Sbjct: 669 ILMIEHLSPDHNGNYSCVARN-------LAAEVSHTQRLVVHVPPRW 708



 Score = 21.8 bits (44), Expect = 4.9
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -3

Query: 230  HSHRTTRRGVPPVSHESSSPAQPRSS 153
            H   +T   + P+S + S P + RSS
Sbjct: 1816 HGTSSTSSDISPMSEQKSLPRRGRSS 1841


>AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 3/72 (4%)
 Frame = +2

Query: 50  KAFGAHKVLIIDILQSRLDFAKSLGADYTLLIG---KDSNEAELVRKIHEILEGHPDVSF 220
           K F AH   +I  L + +DF    G     LIG   +     +   +   + E   +V  
Sbjct: 80  KRFQAHCAGVITALNNVIDFLHDPGLMEASLIGLVERHKKRGQTKEEFQNLKEVMLEVLR 139

Query: 221 DASGAQATVRLA 256
            A G Q T  +A
Sbjct: 140 QALGKQYTPEVA 151


>AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 3/72 (4%)
 Frame = +2

Query: 50  KAFGAHKVLIIDILQSRLDFAKSLGADYTLLIG---KDSNEAELVRKIHEILEGHPDVSF 220
           K F AH   +I  L + +DF    G     LIG   +     +   +   + E   +V  
Sbjct: 80  KRFQAHCAGVITALNNVIDFLHDPGLMEASLIGLVERHKKRGQTKEEFQNLKEVMLEVLR 139

Query: 221 DASGAQATVRLA 256
            A G Q T  +A
Sbjct: 140 QALGKQYTPEVA 151


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -1

Query: 67  VCSKGFSCEH 38
           +CS G+ CEH
Sbjct: 373 ICSNGWICEH 382


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,458
Number of Sequences: 438
Number of extensions: 3399
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)