Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23f23
         (554 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce...    33   0.028
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   2.5  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    25   5.7  
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    25   7.5  
SPCC4G3.15c |||CCR4-Not complex subunit Not2 |Schizosaccharomyce...    25   7.5  
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch...    25   7.5  

>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 512

 Score = 33.1 bits (72), Expect = 0.028
 Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 1/101 (0%)
 Frame = +3

Query: 228 VHVLDLSRI-VAGPFCTMTLGDLGANVIKVESLSGDEARKWGPPFMKDCGDSYYFQSVNR 404
           ++ LD S + +  P   M   D+    +    +S   AR +   F    G SY F ++NR
Sbjct: 367 LYCLDKSFLFIPKPTLLMNTSDITRVTLSRVGMSVSAARTFDLTFTLRSGTSYQFSNINR 426

Query: 405 NKKSICIDFKSQEGKKIIYDLAKKCDVLVENFIPGKLDQMD 527
            ++S  + F   +  KI  DLA   D   +  +   LD  D
Sbjct: 427 VEQSALVAFLESKQIKIHNDLA---DETQQTLLTSALDDED 464


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1877

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 18/61 (29%), Positives = 31/61 (50%)
 Frame = +3

Query: 315 ESLSGDEARKWGPPFMKDCGDSYYFQSVNRNKKSICIDFKSQEGKKIIYDLAKKCDVLVE 494
           +S+  +  RK G   + D G + + QS NR  K +  D K  + ++I   +   C+V +E
Sbjct: 6   KSIRRESLRKLG--CLPDHGWNLFVQSSNRYSKLLEADSKLFKAQRIEDTVLSICEVTLE 63

Query: 495 N 497
           N
Sbjct: 64  N 64


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -1

Query: 146 VLENLHFND-KPQVRSFCEVINNTTTLLTYHANSDKKLHVVTTLFCAY 6
           VL N  +ND K +    C VI     LL +++N++ KL +  +L C++
Sbjct: 701 VLANHGYNDIKFEEMVLC-VIKGDQNLLEHNSNNNAKLALNESLLCSW 747


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
            Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 242  LKSYSSWSVLYYDLGRFRRECNKS 313
            L  Y   +VLY++ G FRR C+ S
Sbjct: 1431 LVEYGPPAVLYHNNGHFRRMCDGS 1454


>SPCC4G3.15c |||CCR4-Not complex subunit Not2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 176

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -2

Query: 523 IW-SSFPGMKFSTSTSHFFARSYIIFFPSCDLKSIQMLFLFLF 398
           +W +  PGMK    T  F  R Y +FF     K I+  FL ++
Sbjct: 122 VWLTPVPGMKPLQRTPQF-ERGYYMFFDPIHWKRIKKDFLLMY 163


>SPBC1271.15c |||translation initiation factor
           IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
 Frame = +3

Query: 252 IVAGP-FCTM-TLGDLGANVIKVESLSGDEARKWGPPFMKDCGDSYYFQSVNRNKKSICI 425
           +VAG  +C + +L D+    IK + L G  A+ +G   +   GD  Y        K I  
Sbjct: 379 LVAGKSWCKVRSLVDVNKKSIK-QVLPGQAAQVYGWKDLPIAGDLAYEVKSESEAKRILS 437

Query: 426 DFKSQEGKKIIYDLAK 473
           D   Q  ++  Y+LA+
Sbjct: 438 DIYRQSNEQNFYELAE 453


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,188,189
Number of Sequences: 5004
Number of extensions: 41384
Number of successful extensions: 107
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)