Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23f23
         (554 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40424-2|AAA81458.3|  343|Caenorhabditis elegans Hypothetical pr...    43   2e-04
Z48638-7|CAA88571.2|  340|Caenorhabditis elegans Hypothetical pr...    40   0.002
Z81119-1|CAB03331.1|  363|Caenorhabditis elegans Hypothetical pr...    29   2.2  
U80846-2|AAC70887.3|  516|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z81072-15|CAB03026.2| 1262|Caenorhabditis elegans Hypothetical p...    28   3.9  
Z81048-10|CAB02845.2| 1262|Caenorhabditis elegans Hypothetical p...    28   3.9  
Z81476-5|CAB03916.1|  332|Caenorhabditis elegans Hypothetical pr...    27   6.9  
U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical p...    27   6.9  
U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical p...    27   6.9  

>U40424-2|AAA81458.3|  343|Caenorhabditis elegans Hypothetical
           protein C24A3.4 protein.
          Length = 343

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 30/103 (29%), Positives = 50/103 (48%)
 Frame = +3

Query: 216 LLNDVHVLDLSRIVAGPFCTMTLGDLGANVIKVESLSGDEARKWGPPFMKDCGDSYYFQS 395
           LL+ + V++L  +   PFC M L D GA+V  ++  +         P ++        Q 
Sbjct: 4   LLSGIKVVELGGLAPVPFCGMILADFGADVTVIDKKN---------PTVE--------QR 46

Query: 396 VNRNKKSICIDFKSQEGKKIIYDLAKKCDVLVENFIPGKLDQM 524
           +NR K     D +  E  K + DL +  DVL++ + PG L++M
Sbjct: 47  MNRGKSMKEFDLRKSEDIKKVRDLCRTSDVLLDPYRPGTLEKM 89


>Z48638-7|CAA88571.2|  340|Caenorhabditis elegans Hypothetical
           protein ZK892.4 protein.
          Length = 340

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 28/102 (27%), Positives = 51/102 (50%)
 Frame = +3

Query: 219 LNDVHVLDLSRIVAGPFCTMTLGDLGANVIKVESLSGDEARKWGPPFMKDCGDSYYFQSV 398
           L+ + V++++ +   P C M L D GA+V  ++  +         P ++        Q +
Sbjct: 5   LSGIKVVEIAGLAPVPHCGMMLADFGADVTVIDKKN---------PAIE--------QRL 47

Query: 399 NRNKKSICIDFKSQEGKKIIYDLAKKCDVLVENFIPGKLDQM 524
           NR K    +D K+ E  K + DL +  DVL++ + PG L++M
Sbjct: 48  NRGKTMKQLDLKNPEDIKKVRDLCQTSDVLLDPYRPGTLEKM 89


>Z81119-1|CAB03331.1|  363|Caenorhabditis elegans Hypothetical
           protein T10H4.2 protein.
          Length = 363

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -2

Query: 526 SIWSSFPGMKFSTSTSHFFARSYIIFFPSCDLKSIQMLFLFLFT 395
           +IW SF  M  S  + HFF R   +  P   +K     ++F +T
Sbjct: 96  TIWCSFYAMMLSLLSIHFFYRYTSVTAPILLMKRFSCRYIFKYT 139


>U80846-2|AAC70887.3|  516|Caenorhabditis elegans Hypothetical
           protein K06A9.2 protein.
          Length = 516

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -1

Query: 131 HFNDKPQVRSFCEVINNTTTLLTYHANSDKKLHV 30
           H +  P  R  CE  +NT  LL +H  SD+++HV
Sbjct: 298 HHDAIPTSRCTCECHHNTDKLLIFH-GSDERVHV 330


>Z81072-15|CAB03026.2| 1262|Caenorhabditis elegans Hypothetical
           protein F30A10.10 protein.
          Length = 1262

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 35/128 (27%), Positives = 53/128 (41%), Gaps = 8/128 (6%)
 Frame = +3

Query: 171 QIVISKLKYSTKLDG---LLNDVHVLDLSRIVAGPFCTMTLG-DLGANVIKVESLSGDEA 338
           Q+  SK     KLD    LL+D+H    S     PFC   LG +    +I  E  + +EA
Sbjct: 35  QVTFSKAMEVAKLDCQKCLLHDMHSSKSSNCRDNPFCIHRLGLEKFEKLITQEQETKEEA 94

Query: 339 RKWGPPFMKDCGDSYYFQSVNRN----KKSICIDFKSQEGKKIIYDLAKKCDVLVENFIP 506
           +K      +D  D         N       + + F   E +++IYD         ENF+P
Sbjct: 95  KK--DQKRRDLNDQPAGLINGGNFCYVNSFLQVWFNVPEFRQLIYDFRPS-----ENFVP 147

Query: 507 GKLDQMDV 530
            +  +M+V
Sbjct: 148 PEAPRMNV 155


>Z81048-10|CAB02845.2| 1262|Caenorhabditis elegans Hypothetical
           protein F30A10.10 protein.
          Length = 1262

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 35/128 (27%), Positives = 53/128 (41%), Gaps = 8/128 (6%)
 Frame = +3

Query: 171 QIVISKLKYSTKLDG---LLNDVHVLDLSRIVAGPFCTMTLG-DLGANVIKVESLSGDEA 338
           Q+  SK     KLD    LL+D+H    S     PFC   LG +    +I  E  + +EA
Sbjct: 35  QVTFSKAMEVAKLDCQKCLLHDMHSSKSSNCRDNPFCIHRLGLEKFEKLITQEQETKEEA 94

Query: 339 RKWGPPFMKDCGDSYYFQSVNRN----KKSICIDFKSQEGKKIIYDLAKKCDVLVENFIP 506
           +K      +D  D         N       + + F   E +++IYD         ENF+P
Sbjct: 95  KK--DQKRRDLNDQPAGLINGGNFCYVNSFLQVWFNVPEFRQLIYDFRPS-----ENFVP 147

Query: 507 GKLDQMDV 530
            +  +M+V
Sbjct: 148 PEAPRMNV 155


>Z81476-5|CAB03916.1|  332|Caenorhabditis elegans Hypothetical
           protein C25F9.8 protein.
          Length = 332

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +3

Query: 381 YYFQSVNRNKKSICI-DFKSQEGKKIIYDLAKKCDVLVENFIPGKLDQ 521
           +YF    R+    C+ D  S    +I Y   K  DVL+EN IP   DQ
Sbjct: 140 FYFDEHVRHAAFACVADSNSCACPQIAY---KALDVLIENLIPSASDQ 184


>U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical
           protein F52C9.1a protein.
          Length = 1336

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +3

Query: 366 DCGDSYYFQSVNRNKKSICIDFKSQEGKKIIYDLAKKCDVL 488
           DC +  +F SV  N  +  ++F  + GK +   + +K DV+
Sbjct: 622 DCDEFSFFVSVRLNIPTKILNFSEEFGKCVSLHILRKLDVI 662


>U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical
           protein F52C9.1b protein.
          Length = 1331

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +3

Query: 366 DCGDSYYFQSVNRNKKSICIDFKSQEGKKIIYDLAKKCDVL 488
           DC +  +F SV  N  +  ++F  + GK +   + +K DV+
Sbjct: 622 DCDEFSFFVSVRLNIPTKILNFSEEFGKCVSLHILRKLDVI 662


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,937,881
Number of Sequences: 27780
Number of extensions: 227278
Number of successful extensions: 514
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)