Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23f23
         (554 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    24   0.90 
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   3.6  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   3.6  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   8.4  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 24.2 bits (50), Expect = 0.90
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -2

Query: 526 SIWSSFPGMKFSTSTSHFFARSYI 455
           ++WS  P M +  ST+H  A+ ++
Sbjct: 99  ALWSLVPHMAWQLSTAHLLAQLFL 122


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = -1

Query: 149 EVLENLHFNDKPQVRSFCEVINNTTTLLTYHANSD 45
           EV+ +L+FND+   +++   + +T  +   + N D
Sbjct: 162 EVMPHLYFNDEVMQKAYNIAMGDTADMKKTYNNID 196


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = -1

Query: 149 EVLENLHFNDKPQVRSFCEVINNTTTLLTYHANSD 45
           EV+ +L+FND+   +++   + +T  +   + N D
Sbjct: 162 EVMPHLYFNDEVMQKAYNIAMGDTADMKKTYNNID 196


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -3

Query: 270 KTDQLLYDLSPK 235
           +TD+LLY + PK
Sbjct: 390 RTDELLYQMIPK 401


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,191
Number of Sequences: 438
Number of extensions: 3034
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15949830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)