Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23f21
         (583 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    28   1.1  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    27   2.6  
SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein P...    26   4.6  
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    26   4.6  
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    26   4.6  
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    25   6.1  

>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -2

Query: 582 YLTLRYIFKIFKHLLSSFIILNMCYG-EYHTKRNILYRFDHSSR 454
           Y  L+YI +IF+HL   F+  N  Y      K  +  RF  SS+
Sbjct: 584 YNDLQYICRIFEHLKGGFMFSNKDYDFLIQLKSKVFNRFQLSSQ 627


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1822

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +1

Query: 16   SYCIVVYKIVCAVDAGVLLWPSSICRRSDLYSRTTLFDIVYYNVQCVMVKMRS 174
            S  +  +K +C V    +   SS   +  LYS   L +I YYN+Q + V+  S
Sbjct: 1163 SAIVSFFKALCEVSWDEIT-SSSDLEQPRLYSLQKLVEISYYNMQRIRVEWSS 1214


>SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein
           Pvg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 389

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +3

Query: 393 WAPVITSHQAGRELVDTSHHILTN 464
           WA V  SH    ELVD S+H L N
Sbjct: 153 WAFVSWSHDDLNELVDKSYHNLHN 176


>SPAC6C3.06c |||P-type ATPase, calcium
           transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 16  SYCIVVYKIVCAVDAGVLLWPSSICRRSDLYSRTTLFDIVY 138
           S C VVY ++ A +   L     +   S +Y+   +F IVY
Sbjct: 839 SVCQVVYSVISAFEPIALFQGLLLVGYSTMYTMLPVFSIVY 879


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 9/33 (27%), Positives = 20/33 (60%)
 Frame = -1

Query: 283 RVVVPTGANSQDVLPPVKPVAVLFRII*NCFHY 185
           R++    A ++DV PP K + ++  ++ +C +Y
Sbjct: 483 RILEICAAMTEDVRPPYKGIILMLNVLDSCTNY 515


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
           Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -2

Query: 276 WYLLVRTHKTSYHQ*NQ*QFCFESFKIVFI 187
           WYLL + + +++   N     F+S KI+ I
Sbjct: 732 WYLLYQAYSSAHRPYNSLLCAFQSLKIILI 761


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,461,645
Number of Sequences: 5004
Number of extensions: 50620
Number of successful extensions: 88
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)