Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23f21
         (583 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0748 - 31463559-31464764                                         33   0.22 
05_01_0509 - 4250217-4250240,4250617-4250711,4251050-4251365           28   4.7  

>02_05_0748 - 31463559-31464764
          Length = 401

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
 Frame = -1

Query: 112 DCKGQNDDK*SSATTILRR--RQRTLSCIPRCNRN 14
           DC+G ND   S ++T++    R  ++SC+ RC+R+
Sbjct: 47  DCQGSNDQGFSDSSTLISSIGRDNSISCLARCSRS 81


>05_01_0509 - 4250217-4250240,4250617-4250711,4251050-4251365
          Length = 144

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -1

Query: 136 ILYRIMSSDCKGQNDDK*SSATTILRRRQRTLSC 35
           +LYR++++ C    + +      ILRR +RTL C
Sbjct: 98  LLYRMINAGCTWAVEPEAEQQQCILRRNRRTLGC 131


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,717,843
Number of Sequences: 37544
Number of extensions: 336392
Number of successful extensions: 595
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)