Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23f21
         (583 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58740-1|AAB00611.1| 1073|Caenorhabditis elegans Hypothetical pr...    27   9.7  
U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>U58740-1|AAB00611.1| 1073|Caenorhabditis elegans Hypothetical
           protein R09H3.1 protein.
          Length = 1073

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +3

Query: 426 RELVDTSHHILTNDQNDKEYY 488
           R  V T HH   NDQ + EYY
Sbjct: 455 RRAVTTIHHSPNNDQYESEYY 475


>U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical
           protein C16A3.7 protein.
          Length = 1119

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 516 MCYGEYHTKRNILYRFDHSSRCDVMCQR 433
           MCYG +  ++NI    D S  C V+C++
Sbjct: 673 MCYGGHRVRKNIPCHID-SVSCGVVCKK 699


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,801,190
Number of Sequences: 27780
Number of extensions: 297258
Number of successful extensions: 581
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)