Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23f19
         (272 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41106-2|AAA82410.1|  797|Caenorhabditis elegans Hypothetical pr...    29   0.45 
Z81456-1|CAB03810.1|  548|Caenorhabditis elegans Hypothetical pr...    28   0.79 
AL032653-3|CAA21713.1|  861|Caenorhabditis elegans Hypothetical ...    27   2.4  
U23172-18|ABC48253.1|  915|Caenorhabditis elegans Hypothetical p...    26   3.2  
U23172-17|ABC48254.1|  923|Caenorhabditis elegans Hypothetical p...    26   3.2  
AC024755-1|AAF59637.2|  369|Caenorhabditis elegans Hypothetical ...    26   3.2  
U80847-2|AAB37982.2|  475|Caenorhabditis elegans Hypothetical pr...    25   5.5  
AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical...    25   5.5  

>U41106-2|AAA82410.1|  797|Caenorhabditis elegans Hypothetical
           protein W06A11.2 protein.
          Length = 797

 Score = 29.1 bits (62), Expect = 0.45
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -2

Query: 253 QISNYEILCYYHDDLLAVEVAVVHQILFDCRSYSWLAFAXYAQGLS 116
           +  NYE+L  +HDDL   ++  +     D R+Y   +F    Q LS
Sbjct: 642 RFQNYEMLKIFHDDLFFSDIKKMPNRWEDNRAYQAFSFLAQLQFLS 687


>Z81456-1|CAB03810.1|  548|Caenorhabditis elegans Hypothetical
           protein B0462.1 protein.
          Length = 548

 Score = 28.3 bits (60), Expect = 0.79
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = -2

Query: 259 YAQISNYEILCYYHDDLLAVEVAVVHQILFDCRSYSWLAFAXYAQGLSC 113
           Y+     EIL    ++ L  +V  +  ++FDC+S+    F+ YA  +SC
Sbjct: 353 YSNQQKAEILKERMEEFLTNDVFYI--VVFDCKSFFTKLFSPYAYVISC 399


>AL032653-3|CAA21713.1|  861|Caenorhabditis elegans Hypothetical
           protein Y54E5B.2 protein.
          Length = 861

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = +2

Query: 167 IKEDLVDHRNLNGKEVVVVITEDFVI 244
           +K+DL++  NLNGK V++    + ++
Sbjct: 266 LKDDLMNFANLNGKLVILTADNELIL 291


>U23172-18|ABC48253.1|  915|Caenorhabditis elegans Hypothetical
           protein F25B5.1a protein.
          Length = 915

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 220 HDDLLAVEVAVVHQILFDCRSYSWLAFAXYAQGLS 116
           HD ++A E ++   I F+  SY +  F  Y +G+S
Sbjct: 860 HDFIVAHEHSMSQPIGFEFVSYKYFEFLVYGRGIS 894


>U23172-17|ABC48254.1|  923|Caenorhabditis elegans Hypothetical
           protein F25B5.1b protein.
          Length = 923

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 220 HDDLLAVEVAVVHQILFDCRSYSWLAFAXYAQGLS 116
           HD ++A E ++   I F+  SY +  F  Y +G+S
Sbjct: 868 HDFIVAHEHSMSQPIGFEFVSYKYFEFLVYGRGIS 902


>AC024755-1|AAF59637.2|  369|Caenorhabditis elegans Hypothetical
           protein Y34B4A.7 protein.
          Length = 369

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = +2

Query: 182 VDHRNLNGKEVVVVITEDFVIRDLSIID 265
           VDH ++  + +  +I+  F++  LS++D
Sbjct: 144 VDHLSIRAQYIAALISAPFIVSSLSLVD 171


>U80847-2|AAB37982.2|  475|Caenorhabditis elegans Hypothetical
           protein C17H11.1 protein.
          Length = 475

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 133 YAQGLSCFDIVIFTLIFIHVQLI 65
           Y + L+ FD++  T+I IH  L+
Sbjct: 87  YIKSLAIFDLIALTMILIHYCLV 109


>AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical
           protein D1007.7 protein.
          Length = 988

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = +2

Query: 155 ITSAIKEDLVDHRNLNGKEVVVVITEDFVIRD 250
           ++  ++E L ++  +NG  +  V+T+DF   D
Sbjct: 259 LSQKVEEVLAENNRINGSSIQNVLTKDFEYSD 290


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,183,068
Number of Sequences: 27780
Number of extensions: 61979
Number of successful extensions: 177
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 227290938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)