Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt23f18
(371 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy... 36 0.002
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ... 29 0.31
SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyc... 28 0.41
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr... 25 2.9
SPAC11D3.18c |||nicotinic acid plasma membrane transporter |Schi... 25 2.9
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom... 25 2.9
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa... 25 3.8
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma... 25 3.8
SPBC609.04 |caf5||spermine family transmembrane transporter Caf5... 25 5.0
SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces po... 24 6.7
SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|... 24 8.8
SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyc... 24 8.8
SPCC1884.02 |nic1|SPCC757.01|NiCoT heavy metal ion transporter N... 24 8.8
SPAC6F12.04 |||COPI-coated vesicle associated protein |Schizosac... 24 8.8
>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 557
Score = 36.3 bits (80), Expect = 0.002
Identities = 14/54 (25%), Positives = 31/54 (57%)
Frame = +2
Query: 176 MGAYVSSYLSNHIGRKYCFILGGFIYCFSYLILTLAVSTSMIIAGRLLVGFSLG 337
+ A S +L++ +GRK + I+ +I+ + + +M++ GR +VG+ +G
Sbjct: 135 ISATTSGWLADWVGRKRLLLCADAIFVIGSVIMAASRNVAMMVVGRFIVGYGIG 188
>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 28.7 bits (61), Expect = 0.31
Identities = 12/48 (25%), Positives = 27/48 (56%)
Frame = +2
Query: 116 SASVGRHLGRRWGVVAASYKMGAYVSSYLSNHIGRKYCFILGGFIYCF 259
+ + R+ G ++A S + +++S+Y+ + G ++ I+ FI CF
Sbjct: 100 ATAANRNHGDGSPILATSLALASFISAYIRSRYGYRFFCIIWIFIDCF 147
>SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 618
Score = 28.3 bits (60), Expect = 0.41
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +2
Query: 212 IGRKYCFILGGFIYCFSYLILTLAVSTSMIIAGRLLVGFSLGFI 343
+GR + IY LILT S+I AG+ + GF + I
Sbjct: 155 LGRYNTIVCSAVIYFIGILILTCTAIPSVIDAGKSMGGFVVSLI 198
>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 703
Score = 25.4 bits (53), Expect = 2.9
Identities = 8/29 (27%), Positives = 22/29 (75%)
Frame = +3
Query: 210 ILVVNIVLYLAGLFIVFRI*Y*LWRCPRV 296
++++++++ +AGLF++ I Y +W+ R+
Sbjct: 285 VVIISLLIIIAGLFLISSI-YEIWKWCRI 312
>SPAC11D3.18c |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 25.4 bits (53), Expect = 2.9
Identities = 16/83 (19%), Positives = 30/83 (36%)
Frame = +2
Query: 26 VVTCLCGVAPELNQCHFVPGRIQSHCVSRGSASVGRHLGRRWGVVAASYKMGAYVSSYLS 205
++ C + P LN ++ + H + + + L G+VA Y+
Sbjct: 385 IIAIGCYIGPGLN-LGWLNNNVAGHYKRATAIGIQQTLANSSGIVAGQIYRSKNAPKYIL 443
Query: 206 NHIGRKYCFILGGFIYCFSYLIL 274
+ C I+GG Y + L
Sbjct: 444 GNAFTLGCVIVGGLAYVVMFFSL 466
>SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1466
Score = 25.4 bits (53), Expect = 2.9
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +2
Query: 134 HLGRRWGVVAASYKMGAYVSSYLSN 208
HLG WG + S G Y + L+N
Sbjct: 972 HLGSEWGDILKSNSNGTYFMTSLAN 996
>SPBC530.15c ||SPBC661.01|spermidine family transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 516
Score = 25.0 bits (52), Expect = 3.8
Identities = 12/53 (22%), Positives = 23/53 (43%)
Frame = +2
Query: 170 YKMGAYVSSYLSNHIGRKYCFILGGFIYCFSYLILTLAVSTSMIIAGRLLVGF 328
+ G V + + GR+ I+ FI+C ++ + A ++ R GF
Sbjct: 123 FASGPVVWAPMCELFGRRRPMIIAVFIFCIFHIAVATAKDIQTVMICRFFCGF 175
>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
2|||Manual
Length = 918
Score = 25.0 bits (52), Expect = 3.8
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +2
Query: 212 IGRKYCFILGGFIYCFSYLILTLAVSTSMI 301
+ +K F++ F + FS+++ L +STS +
Sbjct: 838 LSKKNRFLINLFRFSFSFILYNLLISTSTV 867
>SPBC609.04 |caf5||spermine family transmembrane transporter
Caf5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 531
Score = 24.6 bits (51), Expect = 5.0
Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +2
Query: 170 YKMGAYVSSYLSN--HIGRKYCFILGGFIYCFSYLILTLAVSTSMIIAGRLLVGF 328
Y +G + S LS +GR+ ++L ++ + L S +++ R L GF
Sbjct: 132 YAIGPLILSPLSEIPQVGRQKIYVLSLLVFVCLQIPTALGSSLGVLLPMRFLAGF 186
>SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 422
Score = 24.2 bits (50), Expect = 6.7
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 190 FQLLIKSYWS*ILFYTWRVYLLFFVFNI 273
F+ +++ S + YTW +LLF NI
Sbjct: 392 FKKIVRITLSTFISYTWIPFLLFIFLNI 419
>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 23.8 bits (49), Expect = 8.8
Identities = 10/36 (27%), Positives = 17/36 (47%)
Frame = +1
Query: 229 FYTWRVYLLFFVFNINFGGVHEYDNCWTSPRRLQFG 336
+Y +Y+ F ++ FGG Y W+S + G
Sbjct: 386 WYKVPIYIFFQIWGAFFGGALAYGYHWSSITEFEGG 421
>SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 585
Score = 23.8 bits (49), Expect = 8.8
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 196 LLIKSYWS*ILFYTWRVYLLFFVFNINFGGVHEY 297
++IK YW+ + W + F+F IN GV Y
Sbjct: 185 MMIK-YWTNLNSGIWVTVFIVFLFFINIFGVKGY 217
>SPCC1884.02 |nic1|SPCC757.01|NiCoT heavy metal ion transporter
Nic1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 405
Score = 23.8 bits (49), Expect = 8.8
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = +1
Query: 238 WRVYLLFFVFNINF 279
W++Y+L FVF + F
Sbjct: 203 WKIYVLGFVFGLGF 216
>SPAC6F12.04 |||COPI-coated vesicle associated protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 132
Score = 23.8 bits (49), Expect = 8.8
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +2
Query: 230 FILGGFIYCFSYLILTLAVSTSMIIAGRLLVG 325
F+L GFI FS+ + ++ +I+ G +G
Sbjct: 18 FVLSGFIKLFSFSFVNALLALFIIVFGLGTIG 49
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,707,543
Number of Sequences: 5004
Number of extensions: 36047
Number of successful extensions: 101
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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