Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt23f18
(371 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL021497-2|CAA16400.1| 606|Caenorhabditis elegans Hypothetical ... 38 0.002
U41508-8|AAG00026.4| 553|Caenorhabditis elegans Abnormal catech... 36 0.009
U41508-7|AAP46273.2| 490|Caenorhabditis elegans Abnormal catech... 36 0.009
AF040646-6|AAK31540.1| 510|Caenorhabditis elegans Hypothetical ... 33 0.065
AF040646-5|AAK31539.1| 492|Caenorhabditis elegans Hypothetical ... 33 0.065
Z81449-9|CAB03760.3| 700|Caenorhabditis elegans Hypothetical pr... 33 0.086
Z81449-8|CAI70399.1| 705|Caenorhabditis elegans Hypothetical pr... 33 0.086
X64415-2|CAA45761.1| 700|Caenorhabditis elegans unc-93 protein. 33 0.086
X64415-1|CAA45760.1| 705|Caenorhabditis elegans unc-93 protein. 33 0.086
Z46381-4|CAA86519.2| 604|Caenorhabditis elegans Hypothetical pr... 31 0.35
AL021497-3|CAA16405.1| 613|Caenorhabditis elegans Hypothetical ... 31 0.35
Z68217-2|CAA92470.2| 134|Caenorhabditis elegans Hypothetical pr... 29 0.80
U39645-3|AAA80362.3| 439|Caenorhabditis elegans Gustatory recep... 29 1.1
AF387605-1|AAK70488.1| 427|Caenorhabditis elegans putative chem... 29 1.1
Z81117-2|CAB03314.2| 343|Caenorhabditis elegans Hypothetical pr... 29 1.4
U41272-1|AAA82446.2| 584|Caenorhabditis elegans Hypothetical pr... 29 1.4
U09277-1|AAC13764.1| 532|Caenorhabditis elegans UNC-17 protein. 29 1.4
L19621-1|AAC14456.1| 532|Caenorhabditis elegans acetylcholine t... 29 1.4
AL110485-23|CAB60377.3| 770|Caenorhabditis elegans Hypothetical... 29 1.4
AF039046-2|AAB94218.2| 516|Caenorhabditis elegans Hypothetical ... 29 1.4
AF036701-4|AAB88371.1| 532|Caenorhabditis elegans Uncoordinated... 29 1.4
Z70212-1|CAA94162.1| 406|Caenorhabditis elegans Hypothetical pr... 28 1.9
U40029-1|AAA81123.3| 360|Caenorhabditis elegans Serpentine rece... 27 3.2
U64844-11|AAB18311.1| 482|Caenorhabditis elegans Hypothetical p... 27 4.3
Z99281-35|CAB16518.2| 524|Caenorhabditis elegans Hypothetical p... 27 5.7
AL032648-3|CAA21695.1| 319|Caenorhabditis elegans Hypothetical ... 27 5.7
AF067940-6|AAC19205.1| 223|Caenorhabditis elegans Hypothetical ... 27 5.7
Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical pr... 26 9.9
U88173-4|AAK21386.1| 126|Caenorhabditis elegans Vacuolar h atpa... 26 9.9
U58729-3|AAM54204.1| 955|Caenorhabditis elegans Hypothetical pr... 26 9.9
U58729-2|AAM54203.1| 913|Caenorhabditis elegans Hypothetical pr... 26 9.9
U58729-1|AAM54202.1| 928|Caenorhabditis elegans Hypothetical pr... 26 9.9
AF456360-1|AAL60231.1| 928|Caenorhabditis elegans immunoglobuli... 26 9.9
>AL021497-2|CAA16400.1| 606|Caenorhabditis elegans Hypothetical
protein Y51A2D.4 protein.
Length = 606
Score = 37.9 bits (84), Expect = 0.002
Identities = 16/55 (29%), Positives = 33/55 (60%)
Frame = +2
Query: 176 MGAYVSSYLSNHIGRKYCFILGGFIYCFSYLILTLAVSTSMIIAGRLLVGFSLGF 340
+G+ +S S++IGR+ + I+ L+ +V+ M++ GR+L+G ++GF
Sbjct: 80 VGSLMSGTSSDYIGRRKVILGASAIFTIGALVCAASVNKIMLLVGRVLLGIAIGF 134
>U41508-8|AAG00026.4| 553|Caenorhabditis elegans Abnormal
catecholamine distributionprotein 1, isoform a protein.
Length = 553
Score = 35.9 bits (79), Expect = 0.009
Identities = 20/59 (33%), Positives = 31/59 (52%)
Frame = +2
Query: 167 SYKMGAYVSSYLSNHIGRKYCFILGGFIYCFSYLILTLAVSTSMIIAGRLLVGFSLGFI 343
SY +G + L++ IGR +G + FS L + A S + +I L+GFS+G I
Sbjct: 368 SYLIGTNIFGPLAHRIGRWLSSFIGLVVIGFSLLSIPSATSVAGLIIPHALLGFSIGMI 426
>U41508-7|AAP46273.2| 490|Caenorhabditis elegans Abnormal
catecholamine distributionprotein 1, isoform b protein.
Length = 490
Score = 35.9 bits (79), Expect = 0.009
Identities = 20/59 (33%), Positives = 31/59 (52%)
Frame = +2
Query: 167 SYKMGAYVSSYLSNHIGRKYCFILGGFIYCFSYLILTLAVSTSMIIAGRLLVGFSLGFI 343
SY +G + L++ IGR +G + FS L + A S + +I L+GFS+G I
Sbjct: 305 SYLIGTNIFGPLAHRIGRWLSSFIGLVVIGFSLLSIPSATSVAGLIIPHALLGFSIGMI 363
>AF040646-6|AAK31540.1| 510|Caenorhabditis elegans Hypothetical
protein H17B01.1b protein.
Length = 510
Score = 33.1 bits (72), Expect = 0.065
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Frame = +2
Query: 149 WGVVAASYKMGAYV----SSYLSNHIGRKYCFILGGFIYCFSYLILTLAVSTS---MIIA 307
W V + + +G + S +L++ +GR+ + + ++ LA S M+I
Sbjct: 99 WSVAVSVFAVGGMIGGLSSGWLADKVGRRGALFYNNLLALAAAALMGLAKSVGAYPMVIL 158
Query: 308 GRLLVGFSLGF 340
GRL++G + GF
Sbjct: 159 GRLIIGLNCGF 169
>AF040646-5|AAK31539.1| 492|Caenorhabditis elegans Hypothetical
protein H17B01.1a protein.
Length = 492
Score = 33.1 bits (72), Expect = 0.065
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Frame = +2
Query: 149 WGVVAASYKMGAYV----SSYLSNHIGRKYCFILGGFIYCFSYLILTLAVSTS---MIIA 307
W V + + +G + S +L++ +GR+ + + ++ LA S M+I
Sbjct: 81 WSVAVSVFAVGGMIGGLSSGWLADKVGRRGALFYNNLLALAAAALMGLAKSVGAYPMVIL 140
Query: 308 GRLLVGFSLGF 340
GRL++G + GF
Sbjct: 141 GRLIIGLNCGF 151
>Z81449-9|CAB03760.3| 700|Caenorhabditis elegans Hypothetical
protein C46F11.1b protein.
Length = 700
Score = 32.7 bits (71), Expect = 0.086
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = +2
Query: 185 YVSSYLSNHIGRKYCFILGGFIYCFSYLILTLAVSTSMIIAGRLLVGFSLGFI 343
+V S++ N +G K F++ F+Y F Y+++ L + S +I + G + I
Sbjct: 291 FVPSFMINRLGCKLTFLIAIFVY-FLYIVINLRPTYSSMIPASIFCGIAASCI 342
>Z81449-8|CAI70399.1| 705|Caenorhabditis elegans Hypothetical
protein C46F11.1a protein.
Length = 705
Score = 32.7 bits (71), Expect = 0.086
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = +2
Query: 185 YVSSYLSNHIGRKYCFILGGFIYCFSYLILTLAVSTSMIIAGRLLVGFSLGFI 343
+V S++ N +G K F++ F+Y F Y+++ L + S +I + G + I
Sbjct: 296 FVPSFMINRLGCKLTFLIAIFVY-FLYIVINLRPTYSSMIPASIFCGIAASCI 347
>X64415-2|CAA45761.1| 700|Caenorhabditis elegans unc-93 protein.
Length = 700
Score = 32.7 bits (71), Expect = 0.086
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = +2
Query: 185 YVSSYLSNHIGRKYCFILGGFIYCFSYLILTLAVSTSMIIAGRLLVGFSLGFI 343
+V S++ N +G K F++ F+Y F Y+++ L + S +I + G + I
Sbjct: 291 FVPSFMINRLGCKLTFLIAIFVY-FLYIVINLRPTYSSMIPASIFCGIAASCI 342
>X64415-1|CAA45760.1| 705|Caenorhabditis elegans unc-93 protein.
Length = 705
Score = 32.7 bits (71), Expect = 0.086
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = +2
Query: 185 YVSSYLSNHIGRKYCFILGGFIYCFSYLILTLAVSTSMIIAGRLLVGFSLGFI 343
+V S++ N +G K F++ F+Y F Y+++ L + S +I + G + I
Sbjct: 296 FVPSFMINRLGCKLTFLIAIFVY-FLYIVINLRPTYSSMIPASIFCGIAASCI 347
>Z46381-4|CAA86519.2| 604|Caenorhabditis elegans Hypothetical
protein M01F1.5 protein.
Length = 604
Score = 30.7 bits (66), Expect = 0.35
Identities = 15/55 (27%), Positives = 29/55 (52%)
Frame = +2
Query: 176 MGAYVSSYLSNHIGRKYCFILGGFIYCFSYLILTLAVSTSMIIAGRLLVGFSLGF 340
+G+ S S+ +GRK I + +I A + +++ GR+L+G ++GF
Sbjct: 83 IGSLCSGPGSDFLGRKKIIIGASVTFTIGAIICAAAWTKIILLIGRILLGLAIGF 137
>AL021497-3|CAA16405.1| 613|Caenorhabditis elegans Hypothetical
protein Y51A2D.5 protein.
Length = 613
Score = 30.7 bits (66), Expect = 0.35
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +2
Query: 176 MGAYVSSYLSNHIGRKYCFILGGFIYCFSYLILTLAVSTSMIIAGRLLVGFSLGF 340
+GA+ S S+ GRK I I+ +I +A + +++ GR+ +G +GF
Sbjct: 81 VGAWFSGAGSDRYGRKPIIIGSTLIFVCGAVICAVAWTKIVMLIGRIFLGVGIGF 135
>Z68217-2|CAA92470.2| 134|Caenorhabditis elegans Hypothetical
protein F58G6.3 protein.
Length = 134
Score = 29.5 bits (63), Expect = 0.80
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +2
Query: 173 KMGAYVSSYLSN-HIGRKYCFILG-GFIYCFSYLILTLAVSTSMIIAGRLLVGFSLGFI 343
K +Y+S LS H + + F + GF YC + +T ++ + + ++G S+GF+
Sbjct: 73 KKESYISRLLSTMHFFQTFLFFVQLGFSYCLMLIFMTFSIWLGLAV----VIGLSIGFL 127
>U39645-3|AAA80362.3| 439|Caenorhabditis elegans Gustatory receptor
family protein 2 protein.
Length = 439
Score = 29.1 bits (62), Expect = 1.1
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +1
Query: 199 LIKSYWS*ILFYTWRVYLLFFVFNINFGGVHEYDNCWT 312
+I+ Y+S +LFY++ V + F F + F G+ CW+
Sbjct: 284 VIEEYYSFVLFYSYGVCIPIFCF-LMFVGMSAQSICWS 320
>AF387605-1|AAK70488.1| 427|Caenorhabditis elegans putative
chemoreceptor GUR-2 protein.
Length = 427
Score = 29.1 bits (62), Expect = 1.1
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +1
Query: 199 LIKSYWS*ILFYTWRVYLLFFVFNINFGGVHEYDNCWT 312
+I+ Y+S +LFY++ V + F F + F G+ CW+
Sbjct: 272 VIEEYYSFVLFYSYGVCIPIFCF-LMFVGMSAQSICWS 308
>Z81117-2|CAB03314.2| 343|Caenorhabditis elegans Hypothetical
protein T06E6.4 protein.
Length = 343
Score = 28.7 bits (61), Expect = 1.4
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 5/35 (14%)
Frame = +2
Query: 176 MGAYVSSYLSNHIGR-----KYCFILGGFIYCFSY 265
+G V Y+SNH+G +CF+L + CF Y
Sbjct: 81 VGEVVRKYISNHMGLTIWMFMFCFVLPASLSCFIY 115
>U41272-1|AAA82446.2| 584|Caenorhabditis elegans Hypothetical
protein T03G11.4 protein.
Length = 584
Score = 28.7 bits (61), Expect = 1.4
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Frame = -1
Query: 191 KRMHPFCSWQQPRPSGDQDG-GRRMQTHAKRNG-TVSDLAQNGTGLVPELHHTNTSPQKH 18
K H C G Q G R+ A++ G T ++ N TGL PE+ H N P K
Sbjct: 411 KMDHLVCFIAGTLSQGSQHGFPRKHLDMAEKIGETCHNMYDNPTGLGPEIAHFNMIPGKE 470
Query: 17 D 15
D
Sbjct: 471 D 471
>U09277-1|AAC13764.1| 532|Caenorhabditis elegans UNC-17 protein.
Length = 532
Score = 28.7 bits (61), Expect = 1.4
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +2
Query: 191 SSYLSNHIGRKYCFILGGFIYCFSYLILTLAVSTSMIIAGRLLVGFSLGFIQNTHL 358
S Y+ + +G + ILG FS I L S +++ R L GF F + L
Sbjct: 120 SGYIIDRVGYEIPMILGLCTMFFSTAIFALGKSYGVLLFARSLQGFGSAFADTSGL 175
>L19621-1|AAC14456.1| 532|Caenorhabditis elegans acetylcholine
transporter protein.
Length = 532
Score = 28.7 bits (61), Expect = 1.4
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +2
Query: 191 SSYLSNHIGRKYCFILGGFIYCFSYLILTLAVSTSMIIAGRLLVGFSLGFIQNTHL 358
S Y+ + +G + ILG FS I L S +++ R L GF F + L
Sbjct: 120 SGYIIDRVGYEIPMILGLCTMFFSTAIFALGKSYGVLLFARSLQGFGSAFADTSGL 175
>AL110485-23|CAB60377.3| 770|Caenorhabditis elegans Hypothetical
protein Y46G5A.29 protein.
Length = 770
Score = 28.7 bits (61), Expect = 1.4
Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 6/108 (5%)
Frame = +2
Query: 20 VSVVTCLCGVAPELNQCHFVPGRIQS---HCVSRGSASVGRHLGRRWGVVAASYKMGAYV 190
+S++T + +L+ HF G ++ HC SR S + RHL R + + +
Sbjct: 7 LSLLTFDLVIGSDLDANHFFKGLYETSGFHCYSRDSMRLPRHLHGRPQTTDPPFDLSVFD 66
Query: 191 SS---YLSNHIGRKYCFILGGFIYCFSYLILTLAVSTSMIIAGRLLVG 325
+S S IG+ Y L +++ ++ + S I G L G
Sbjct: 67 ASGKRVESYEIGKVYTVKLEAYVHFRGLMLQPRLCTQSGAIIGSLRGG 114
>AF039046-2|AAB94218.2| 516|Caenorhabditis elegans Hypothetical
protein R09B5.11 protein.
Length = 516
Score = 28.7 bits (61), Expect = 1.4
Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Frame = +2
Query: 149 WGVVAASYKMG----AYVSSYLSNHIGRKYCFILGGFIYCFSYLILTLAVSTS---MIIA 307
W V + + +G ++ S +L++ GRK + + + + L+ + + MI+
Sbjct: 100 WSVAVSMFSVGGMFGSFCSGFLADKFGRKSTLLYNNILALLAAVCLSTSKLFNFYPMIVF 159
Query: 308 GRLLVGFSLG 337
GR LVG + G
Sbjct: 160 GRFLVGLNCG 169
>AF036701-4|AAB88371.1| 532|Caenorhabditis elegans Uncoordinated
protein 17, isoform a protein.
Length = 532
Score = 28.7 bits (61), Expect = 1.4
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +2
Query: 191 SSYLSNHIGRKYCFILGGFIYCFSYLILTLAVSTSMIIAGRLLVGFSLGFIQNTHL 358
S Y+ + +G + ILG FS I L S +++ R L GF F + L
Sbjct: 120 SGYIIDRVGYEIPMILGLCTMFFSTAIFALGKSYGVLLFARSLQGFGSAFADTSGL 175
>Z70212-1|CAA94162.1| 406|Caenorhabditis elegans Hypothetical
protein R04D3.2 protein.
Length = 406
Score = 28.3 bits (60), Expect = 1.9
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -1
Query: 131 GRRMQTHAKRNGTVSDLAQNGTGLVPEL 48
G+R++ HA+ GTV QN TG+V L
Sbjct: 90 GQRLRAHAELGGTVLVTEQNLTGVVESL 117
>U40029-1|AAA81123.3| 360|Caenorhabditis elegans Serpentine
receptor, class e (epsilon)protein 39 protein.
Length = 360
Score = 27.5 bits (58), Expect = 3.2
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = +3
Query: 99 IAFRVGLHPSAAILVAAGAWLLPATKWVHTFPVTYQIILVVNIVLYLAGLFIV 257
+A +V L + AIL G +L A W+ + + Y I+ V V L LFIV
Sbjct: 251 LAKKVVLFAAFAILCGMGLLILAAMHWIDDY-IIY-IVTVAEAVFNLNPLFIV 301
>U64844-11|AAB18311.1| 482|Caenorhabditis elegans Hypothetical
protein T22F3.8 protein.
Length = 482
Score = 27.1 bits (57), Expect = 4.3
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = +2
Query: 149 WGVVAASYKMGAYVSSYLSNHIGRKYCFILGGFIYCFSYLILTLAV--STSMIIAGRLLV 322
W V A + +G + L G ++ F L G + C S ++ A + + +I R +
Sbjct: 99 WAVAAGTI-IGTVPMNLLLVKYGARFPFFLSGIVSCISTSLIPFAAKWNFAFLIILRFIQ 157
Query: 323 GFS 331
GFS
Sbjct: 158 GFS 160
>Z99281-35|CAB16518.2| 524|Caenorhabditis elegans Hypothetical
protein Y57G11C.17 protein.
Length = 524
Score = 26.6 bits (56), Expect = 5.7
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = +3
Query: 126 SAAILVAAGAWLLPATKWVHTFPVTYQIILVVNIVLYLAGLFIVFR 263
S ++LV WL +KW I+ IV + +G I +R
Sbjct: 131 SFSVLVIVATWLTGGSKWTPWLLCIVFIVRATQIVPFSSGTHIFYR 176
>AL032648-3|CAA21695.1| 319|Caenorhabditis elegans Hypothetical
protein Y54G9A.4 protein.
Length = 319
Score = 26.6 bits (56), Expect = 5.7
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Frame = +2
Query: 230 FILGGFIYCFSYLILTLAVSTSMIIAG----RLLVGFSLGF-IQNTH 355
FIL F CF++ I AVS + I G + +V FSLG + TH
Sbjct: 179 FILHVFFECFAFGIQEDAVSVTSIFLGIAMHKAIVMFSLGMKLTRTH 225
>AF067940-6|AAC19205.1| 223|Caenorhabditis elegans Hypothetical
protein F36F12.6 protein.
Length = 223
Score = 26.6 bits (56), Expect = 5.7
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -1
Query: 173 CSWQQPRPSGDQ 138
C+WQ PRPS D+
Sbjct: 199 CTWQDPRPSSDK 210
>Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical protein
C06B8.7 protein.
Length = 3118
Score = 25.8 bits (54), Expect = 9.9
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +1
Query: 277 FGGVHEYDNCWTSPRRLQFGLHTKYSFI 360
F G+H + N TS + +Q LH F+
Sbjct: 2407 FNGIHLFGNISTSSQAVQLNLHNTVFFL 2434
>U88173-4|AAK21386.1| 126|Caenorhabditis elegans Vacuolar h atpase
protein 10 protein.
Length = 126
Score = 25.8 bits (54), Expect = 9.9
Identities = 13/45 (28%), Positives = 19/45 (42%)
Frame = -1
Query: 155 RPSGDQDGGRRMQTHAKRNGTVSDLAQNGTGLVPELHHTNTSPQK 21
R + DQ G + + + L Q + PELHH T +K
Sbjct: 75 RDTEDQISGMKQSVAGNKQAVIVRLLQLVCDIKPELHHNLTLQKK 119
>U58729-3|AAM54204.1| 955|Caenorhabditis elegans Hypothetical
protein F02G3.1c protein.
Length = 955
Score = 25.8 bits (54), Expect = 9.9
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = -3
Query: 84 PGTKWHWFSSG 52
P KWHWF +G
Sbjct: 533 PSPKWHWFKNG 543
>U58729-2|AAM54203.1| 913|Caenorhabditis elegans Hypothetical
protein F02G3.1b protein.
Length = 913
Score = 25.8 bits (54), Expect = 9.9
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = -3
Query: 84 PGTKWHWFSSG 52
P KWHWF +G
Sbjct: 506 PSPKWHWFKNG 516
>U58729-1|AAM54202.1| 928|Caenorhabditis elegans Hypothetical
protein F02G3.1a protein.
Length = 928
Score = 25.8 bits (54), Expect = 9.9
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = -3
Query: 84 PGTKWHWFSSG 52
P KWHWF +G
Sbjct: 506 PSPKWHWFKNG 516
>AF456360-1|AAL60231.1| 928|Caenorhabditis elegans immunoglobulin
domain-containingprotein F02G3.1 protein.
Length = 928
Score = 25.8 bits (54), Expect = 9.9
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = -3
Query: 84 PGTKWHWFSSG 52
P KWHWF +G
Sbjct: 506 PSPKWHWFKNG 516
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,598,657
Number of Sequences: 27780
Number of extensions: 209737
Number of successful extensions: 801
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 535612900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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