Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt23f09
(460 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 32 0.037
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 26 2.4
SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharo... 25 4.2
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom... 25 4.2
SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27 |Schizo... 25 5.6
SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy... 25 7.3
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 25 7.3
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr... 24 9.7
SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr... 24 9.7
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po... 24 9.7
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 32.3 bits (70), Expect = 0.037
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -2
Query: 165 PHFYK*SIFYISALNFSYIYHSLQKNLK*NLYENCLNRF 49
PH + S FYI++L ++ H L +Y NCLN F
Sbjct: 1188 PHDGRISAFYIASLQKYFVKHGLSPYAFSTVYSNCLNPF 1226
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 26.2 bits (55), Expect = 2.4
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 267 LAGDYMQNMDGETYALLYYATRAEFMDYSWYMAK*KSLH 383
L+G +QN GE ++LL + F Y + KSLH
Sbjct: 522 LSGTPLQNRIGELFSLLRFLRADPFAYYYCLQCECKSLH 560
>SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharomyc
es pombe|chr 2|||Manual
Length = 372
Score = 25.4 bits (53), Expect = 4.2
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +1
Query: 325 PHEQNSWTIHGIWPNKN 375
P E WT +G+W KN
Sbjct: 307 PWESLDWTFNGLWARKN 323
>SPAC926.04c |hsp90|swo1|heat shock protein
Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
Length = 704
Score = 25.4 bits (53), Expect = 4.2
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 123 NFSYIYHSLQKNLK*NLYENCLNR 52
NF Y + KNLK ++E+ NR
Sbjct: 408 NFKTFYDAFSKNLKLGIHEDAANR 431
>SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 413
Score = 25.0 bits (52), Expect = 5.6
Identities = 11/41 (26%), Positives = 18/41 (43%)
Frame = +3
Query: 246 FSNIHATLAGDYMQNMDGETYALLYYATRAEFMDYSWYMAK 368
F+ + L D +D E + Y R DY+W++ K
Sbjct: 313 FALLEGRLPFDSYPTLDPENVRIKRYVQRLVRCDYTWHLCK 353
>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 24.6 bits (51), Expect = 7.3
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -2
Query: 372 FIWPYTMNSP*ILLVWHNTRVRRFLHPYSAYSR 274
FIWP+ ++SP L W + + + F+ A R
Sbjct: 209 FIWPFQLSSP--LGGWRDRKFKHFIEGGDAGKR 239
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 24.6 bits (51), Expect = 7.3
Identities = 7/17 (41%), Positives = 12/17 (70%)
Frame = -2
Query: 210 ICKTRQQKYSITQISPH 160
IC ++ KY++T + PH
Sbjct: 389 ICLSKDSKYALTNLEPH 405
>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 905
Score = 24.2 bits (50), Expect = 9.7
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = -3
Query: 341 EFCSCGIIQECVGFSIHILHIVAG 270
+F +CG+ + + SIH H++ G
Sbjct: 109 QFMTCGLEKTMIPASIHCDHLIVG 132
>SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 527
Score = 24.2 bits (50), Expect = 9.7
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +1
Query: 262 QHWPATICRIWMEKPTHSCIMPHEQNSWTI 351
++W A I + E THSC+ E+++W +
Sbjct: 393 KYWDALIVDLSAE--THSCVDIFERDTWPV 420
>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 472
Score = 24.2 bits (50), Expect = 9.7
Identities = 17/70 (24%), Positives = 27/70 (38%)
Frame = -3
Query: 413 DQVLLQKNGPME*FLFGHIP*IVHEFCSCGIIQECVGFSIHILHIVAGQCCVNIRKSHSL 234
DQ N P+ FL H+ ++ F S + F +LH + C + + L
Sbjct: 366 DQFARTWNKPVHYFLLRHVYVPLNSFMSKSLSTFFTFFVSSVLHELVMGCITLKIRGYGL 425
Query: 233 FFVSLSSAYV 204
FF Y+
Sbjct: 426 FFQMTQIPYI 435
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,086,625
Number of Sequences: 5004
Number of extensions: 45690
Number of successful extensions: 117
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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